RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PIK3R6Q5UE93 754 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 DNAJB7Q7Z6W7 309 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CDK20Q8IZL9 346 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 RHEBL1Q8TAI7 183 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 NSMCE3Q96MG7 304 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 GKN1Q9NS71 199 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 ACTR3BQ9P1U1 418 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 DNAJB9Q9UBS3 223 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 EFCAB10A6NFE3 127 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 M0QZQ0 153 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 SDHDO14521 159 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CD68P34810 354 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 USP46P62068 366 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CHIT1Q13231 466 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CEP97Q8IW35 865 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 SCML4Q8N228 414 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 PDPRQ8NCN5 879 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 ZDHHC3Q9NYG2 299 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CD84Q9UIB8 345 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 ASF1AQ9Y294 204 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CDC7O00311 574 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF37AP17032 561 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 SRSF11Q05519 484 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 NR1D2Q14995 579 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 SFT2D3Q587I9 215 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 FAM171BQ6P995 826 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF783Q6ZMS7 281 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 LYSMD3Q7Z3D4 306 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 TMPRSS11BQ86T26 416 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 NAT16Q8N8M0 369 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 BORCS5Q969J3 196 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 PRR11Q96HE9 360 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 MTMR10Q9NXD2 777 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 RPS6KB2Q9UBS0 482 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 SRRDQ9UH36 339 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 NCKAP1Q9Y2A7 1128 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 A0A1W2PP18 115 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 PRNPP04156 253 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CD1DP15813 335 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 MAGEA10P43363 369 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 GSTM5P46439 218 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 MTPNP58546 118 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 RPS7P62081 194 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 MERTKQ12866 999 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 LDLRAP1Q5SW96 308 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 MED27Q6P2C8 311 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 FAM43BQ6ZT52 329 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 LRRC70Q7Z2Q7 622 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 OR8H2Q8N162 312 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 GALNT15Q8N3T1 639 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CANT1Q8WVQ1 401 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 CDK15Q96Q40 435 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 HBEGFQ99075 208 aa10.61□□□□□ -0.71
LIMCH1-205ENST00000503057 UBR3Q6ZT12 1888 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 T-ENOLP0DO92 83 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 NFKB2Q00653 900 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ITGADQ13349 1161 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 NAE1Q13564 534 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CBX2Q14781 532 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 INAQ16352 499 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CCDC142Q17RM4 750 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CARD16Q5EG05 197 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 SPANXN2Q5MJ10 180 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 PLPP4Q5VZY2 271 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ALKAL1Q6UXT8 129 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF280BQ86YH2 543 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 KBTBD8Q8NFY9 601 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 TSPEARQ8WU66 669 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 EEF1AKMT1Q8WVE0 214 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ZUFSPQ96AP4 578 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CAPNS2Q96L46 248 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 VPS35Q96QK1 796 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 PAAF1Q9BRP4 392 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC29A3Q9BZD2 475 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 PDP1Q9P0J1 537 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 U3KQV3 271 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 STK25O00506 426 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 SLC35G4P0C7Q5 338 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 GJA5P36382 358 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF846Q147U1 533 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 TP53INP2Q8IXH6 220 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 AMER2Q8N7J2 671 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ARNTL2Q8WYA1 636 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 KCNJ9Q92806 393 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 MRPL48Q96GC5 212 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ZNF607Q96SK3 696 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 KLHL25Q9H0H3 589 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ATG10Q9H0Y0 220 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 S1PR4O95977 384 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ANXA4P09525 319 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 ALPIP09923 528 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CYP4B1P13584 511 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CYP4F8P98187 520 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 GOLGA7Q7Z5G4 137 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 AP2M1Q96CW1 435 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CCDC3Q9BQI4 270 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 TMEM245Q9H330 911 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 KCNK13Q9HB14 408 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 CAPN10Q9HC96 672 aa10.6□□□□□ -0.71
LIMCH1-205ENST00000503057 WDR6Q9NNW5 1121 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms