RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 TMEM159Q96B96 161 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 SKA1Q96BD8 255 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 NXNL1Q96CM4 212 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 APOPT1Q96IL0 206 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 SELENOSQ9BQE4 189 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 TIMM29Q9BSF4 260 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 SMOC1Q9H4F8 434 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 VPS13AQ96RL7 3174 aa19.01■□□□□ 0.63
USP39-218ENST00000493829 FANCMQ8IYD8 2048 aa19■□□□□ 0.63
USP39-218ENST00000493829 HMGB1P1B2RPK0 211 aaPredicted RBP19■□□□□ 0.63
USP39-218ENST00000493829 COPEO14579 308 aa19■□□□□ 0.63
USP39-218ENST00000493829 SNX2O60749 519 aa19■□□□□ 0.63
USP39-218ENST00000493829 CD9P21926 228 aa19■□□□□ 0.63
USP39-218ENST00000493829 RPL10P27635 214 aaKnown RBP19■□□□□ 0.63
USP39-218ENST00000493829 PDHA2P29803 388 aa19■□□□□ 0.63
USP39-218ENST00000493829 IL2P60568 153 aa19■□□□□ 0.63
USP39-218ENST00000493829 CTBSQ01459 385 aa19■□□□□ 0.63
USP39-218ENST00000493829 TCF15Q12870 199 aa19■□□□□ 0.63
USP39-218ENST00000493829 C1orf61Q13536 156 aa19■□□□□ 0.63
USP39-218ENST00000493829 ZNF658BQ4V348 819 aaPredicted RBP19■□□□□ 0.63
USP39-218ENST00000493829 CDHR3Q6ZTQ4 885 aa19■□□□□ 0.63
USP39-218ENST00000493829 SH2D5Q6ZV89 423 aa19■□□□□ 0.63
USP39-218ENST00000493829 ACMSDQ8TDX5 336 aa19■□□□□ 0.63
USP39-218ENST00000493829 ASZ1Q8WWH4 475 aa19■□□□□ 0.63
USP39-218ENST00000493829 CABS1Q96KC9 395 aa19■□□□□ 0.63
USP39-218ENST00000493829 TSNARE1Q96NA8 513 aa19■□□□□ 0.63
USP39-218ENST00000493829 SYTL2Q9HCH5 934 aa19■□□□□ 0.63
USP39-218ENST00000493829 KCNK9Q9NPC2 374 aa19■□□□□ 0.63
USP39-218ENST00000493829 IGSF5Q9NSI5 407 aa19■□□□□ 0.63
USP39-218ENST00000493829 SENP1Q9P0U3 644 aa19■□□□□ 0.63
USP39-218ENST00000493829 IKZF3Q9UKT9 509 aa19■□□□□ 0.63
USP39-218ENST00000493829 RAB23Q9ULC3 237 aa19■□□□□ 0.63
USP39-218ENST00000493829 SMG5Q9UPR3 1016 aaKnown RBP19■□□□□ 0.63
USP39-218ENST00000493829 CDYLQ9Y232 598 aa19■□□□□ 0.63
USP39-218ENST00000493829 DGKBQ9Y6T7 804 aa19■□□□□ 0.63
USP39-218ENST00000493829 TMEM131Q92545 1883 aa19■□□□□ 0.63
USP39-218ENST00000493829 NPEPPSL1A6NEC2 478 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 KPNA5O15131 536 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 SDC3O75056 442 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 TSPAN12O95859 305 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 CTSEP14091 401 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 VCLP18206 1134 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 DGKAP23743 735 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 RGS4P49798 205 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 BNC1Q01954 994 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 PRRT3Q5FWE3 981 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 PLEKHS1Q5SXH7 462 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 LRRC61Q9BV99 259 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 MED4Q9NPJ6 270 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 LATS2Q9NRM7 1088 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 CUL9Q8IWT3 2517 aa18.99■□□□□ 0.63
USP39-218ENST00000493829 SLC5A10A0PJK1 596 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 LIN7AO14910 233 aaPredicted RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 LTA4HP09960 611 aaKnown RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 ACTR1BP42025 376 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 ACTR1AP61163 376 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 IRX4P78413 519 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 IL9RQ01113 521 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 SLC18A2Q05940 514 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 PEAR1Q5VY43 1037 aaPredicted RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 C16orf46Q6P387 395 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 CLEC14AQ86T13 490 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 MYO1HQ8N1T3 1032 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 NKAPQ8N5F7 415 aaKnown RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 BANPQ8N9N5 519 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 SPDYE1Q8NFV5 336 aaPredicted RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 CFAP61Q8NHU2 1237 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 GLMNQ92990 594 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 SCYL1Q96KG9 808 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 ARRDC1-AS1Q9H2J1 176 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 FAM86C1Q9NVL1 165 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 C17orf113A0A1B0GUU1 675 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 PDZK1P1A8MUH7 402 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 H3BM21 787 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 CDC7O00311 574 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 BTN3A1O00481 513 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 ZBTB14O43829 449 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 GLRA3O75311 464 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 GPC4O75487 556 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 KLHL2O95198 593 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 CSF2P04141 144 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 NME1P15531 152 aaKnown RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 CD1DP15813 335 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 MPLP40238 635 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 CTSKP43235 329 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 ILF3Q12906 894 aaKnown RBP eCLIP18.98■□□□□ 0.635e-9■■■■■ 33.1
USP39-218ENST00000493829 ABRQ12979 859 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 GRIK2Q13002 908 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 DUOXA1Q1HG43 343 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 TRIM61Q5EBN2 209 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 ANKRD42Q8N9B4 389 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 EXT2Q93063 718 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 UBXN10Q96LJ8 280 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 IQCGQ9H095 443 aaKnown RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 WWP1Q9H0M0 922 aa18.98■□□□□ 0.63
USP39-218ENST00000493829 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 DNMT3AQ9Y6K1 912 aaPredicted RBP18.98■□□□□ 0.63
USP39-218ENST00000493829 DLL1O00548 723 aa18.97■□□□□ 0.63
USP39-218ENST00000493829 EPN2O95208 641 aa18.97■□□□□ 0.63
USP39-218ENST00000493829 GSTM1P09488 218 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms