RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SCNN1AP37088 669 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 RABGGTBP53611 331 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 RAPSNQ13702 412 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 SOWAHAQ2M3V2 549 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ZNF697Q5TEC3 545 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ANKRD23Q86SG2 305 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 BEND7Q8N7W2 519 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 NAT16Q8N8M0 369 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 MTMR14Q8NCE2 650 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 DNAJB8Q8NHS0 232 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 PHF12Q96QT6 1004 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 LPIN3Q9BQK8 851 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 EBPLQ9BY08 206 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 MFSD1Q9H3U5 465 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 KAT8Q9H7Z6 458 aaKnown RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ABCB9Q9NP78 766 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 IMP3Q9NV31 184 aaKnown RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 DLG5Q8TDM6 1919 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 PTPRJQ12913 1337 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ZNF99A8MXY4 864 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 GTPBP1O00178 669 aaKnown RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 SYN3O14994 580 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 CCNB2O95067 398 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ADH1CP00326 375 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ITGA3P26006 1051 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 NRLP54845 237 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 CDH12P55289 794 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 LRRC3Q9BY71 257 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 C1orf21Q9H246 121 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 PHF11Q9UIL8 331 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ABHD14A-ACY1A0A1B0GW23 586 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 H0YGN5 161 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 NOBOXO60393 691 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 USP2O75604 605 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 PTX3P26022 381 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 RPL26P61254 145 aaKnown RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 RPS14P62263 151 aaKnown RBP16.23■□□□□ 0.19
COL7A1-210ENST00000487017 ERVK-8P63133 956 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 NFS1Q9Y697 457 aa16.23■□□□□ 0.19
COL7A1-210ENST00000487017 PEX10O60683 326 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 CTNNB1P35222 781 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 CLK3P49761 638 aaKnown RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SLC18A2Q05940 514 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TEAD4Q15561 434 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 HAPLN3Q96S86 360 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 EQTNQ9NQ60 294 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 PPM1HQ9ULR3 514 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FAM25EA8MYX2 175 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 EI24O14681 340 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SLC30A4O14863 429 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FKBP1BP68106 108 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SLC25A11Q02978 314 aaKnown RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 BEND5Q7L4P6 421 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SLC43A3Q8NBI5 491 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 ESAMQ96AP7 390 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TESMINQ9Y4I5 508 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 PEAK1Q9H792 1746 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FAM92AA1XBS5 289 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 C8GP07360 202 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SMPD1P17405 629 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 CCR3P51677 355 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 RPS6KA3P51812 740 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 PNLIPRP1P54315 467 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 OAFQ86UD1 273 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 ADGRG2Q8IZP9 1017 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TRPV1Q8NER1 839 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 UPF1Q92900 1129 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FEM1CQ96JP0 617 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TNKS2Q9H2K2 1166 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FAM83DQ9H4H8 585 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TUBA8Q9NY65 449 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 CIDEBQ9UHD4 219 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 PCDHGB3Q9Y5G1 929 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 ARL5AQ9Y689 179 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 CACNB4O00305 520 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 KERAO60938 352 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 EEFSECP57772 596 aaKnown RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 ZBTB6Q15916 424 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 RASSF5Q8WWW0 418 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 OR52B2Q96RD2 323 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 SNX7Q9UNH6 387 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 FCF1Q9Y324 198 aaKnown RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 RBM7Q9Y580 266 aaKnown RBP16.22■□□□□ 0.19
COL7A1-210ENST00000487017 TEX264Q9Y6I9 313 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 UBR1Q8IWV7 1749 aa16.22■□□□□ 0.19
COL7A1-210ENST00000487017 RBM47A0AV96 593 aaKnown RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 ERN1O75460 977 aaKnown RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 FGF19O95750 216 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 CHRNA4P43681 627 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SCN1BQ07699 218 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 POLR3BQ9NW08 1133 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 GPC6Q9Y625 555 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SCN2BO60939 215 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 STBD1O95210 358 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SPATA31D3P0C874 917 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 CDH1P12830 882 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 XRCC1P18887 633 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-210ENST00000487017 BCAP31P51572 246 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 SP3Q02447 781 aa16.21■□□□□ 0.19
COL7A1-210ENST00000487017 PUDPQ08623 228 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms