RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GATA6Q92908 595 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 HSPBAP1Q96EW2 488 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 OLFM1Q99784 485 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 REXO4Q9GZR2 422 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 INTS10Q9NVR2 710 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 KLHL28Q9NXS3 571 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 DKK3Q9UBP4 350 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 RPS6KB2Q9UBS0 482 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TM4SF4P48230 202 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF33AQ06730 810 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PTPRCAPQ14761 206 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TMEM198Q66K66 360 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 C2orf73Q8N5S3 287 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 UTP4Q969X6 686 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PANX1Q96RD7 426 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ROGDIQ9GZN7 287 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ARMC7Q9H6L4 198 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 COQ10BQ9H8M1 238 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 DNAJC11Q9NVH1 559 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TMEM248Q9NWD8 314 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PHF24Q9UPV7 400 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 INSL5Q9Y5Q6 135 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 GSAPA4D1B5 854 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 IDH3BO43837 385 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 NPHS1O60500 1241 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ATG13O75143 517 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 SIX3O95343 332 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PABPC1P11940 636 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 GUCA1AP43080 201 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PLA2G4EQ3MJ16 856 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ZIK1Q3SY52 487 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 IL23RQ5VWK5 629 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 CYP20A1Q6UW02 462 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 LYSMD3Q7Z3D4 306 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 SCAIQ8N9R8 606 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 POC5Q8NA72 575 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 OXSMQ9NWU1 459 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 NUDT4Q9NZJ9 180 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TMA7Q9Y2S6 64 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 PIP5K1BO14986 540 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TPD52L2O43399 206 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CYP7B1O75881 506 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CAPN1P07384 714 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CLCN2P51788 898 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SLC16A1P53985 500 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SLC9B1Q4ZJI4 515 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 C2orf27AQ580R0 203 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF549Q6P9A3 640 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CPSF7Q8N684 471 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CELF5Q8N6W0 485 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SMYD1Q8NB12 490 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 FERD3LQ96RJ6 166 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 RHBGQ9H310 441 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ENTPD4Q9Y227 616 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 AP3M1Q9Y2T2 418 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 KRT87PA6NCN2 255 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 URADA6NGE7 173 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CLDN25C9JDP6 229 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 E7ESA3 106 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 RFXANKO14593 260 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 OR6B1O95007 311 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 T-ENOLP0DO92 83 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ILF3Q12906 894 aaKnown RBP eCLIP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SERINC3Q13530 473 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CST9Q5W186 159 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SMYD5Q6GMV2 418 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SPATA19Q7Z5L4 167 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 PIM3Q86V86 326 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TREML1Q86YW5 311 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TBC1D21Q8IYX1 336 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ARFGAP1Q8N6T3 406 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF784Q8NCA9 323 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 OR10G6Q8NH81 332 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 PNPT1Q8TCS8 783 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 LRTOMTQ8WZ04 291 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 RERGQ96A58 199 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 MCCC1Q96RQ3 725 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 GPR22Q99680 433 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 RIBC2Q9H4K1 309 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 LRTM1Q9HBL6 345 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ABCB10Q9NRK6 738 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 IMP3Q9NV31 184 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 BBIP1A8MTZ0 92 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ANKRD66B4E2M5 251 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 AREL1O15033 823 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 INPPL1O15357 1258 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 DLX3O60479 287 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 IDSP22304 550 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 MTHFRP42898 656 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ZBED5Q49AG3 693 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 RTP2Q5QGT7 225 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 VITQ6UXI7 678 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 AKAP14Q86UN6 197 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TMEM126BQ8IUX1 230 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CBR4Q8N4T8 237 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TSTD1Q8NFU3 115 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TMEM174Q8WUU8 243 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 TSGA13Q96PP4 275 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms