RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, human

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDC1-206	ENST00000482879	ZBTB2	Q8N680	514 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	LILRA3	Q8N6C8	439 aa	Predicted RBP	12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	GIMAP7	Q8NHV1	300 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	CD200R1	Q8TD46	325 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	ASZ1	Q8WWH4	475 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	TCEAL3	Q969E4	200 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	TMEM159	Q96B96	161 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	SLC30A3	Q99726	388 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	LRRC61	Q9BV99	259 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	GTPBP2	Q9BX10	602 aa	Known RBP	12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	COG4	Q9H9E3	785 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	EURL	Q9NYK6	297 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	KLHL42	Q9P2K6	505 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	GULP1	Q9UBP9	304 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879	ST14	Q9Y5Y6	855 aa		12.01	□□□□□ -0.49
SDC1-206	ENST00000482879		A0A1B0GTQ1	180 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SLC5A10	A0PJK1	596 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	TPP1	O14773	563 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	RGS16	O15492	202 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	PHGDH	O43175	533 aa	Known RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	AQP9	O43315	295 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SNX2	O60749	519 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	GPC4	O75487	556 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	MT-ND3	P03897	115 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	CELA2B	P08218	269 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	KRT15	P19012	456 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	IDS	P22304	550 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	DGKA	P23743	735 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	CRABP2	P29373	138 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	PREP	P48147	710 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SERPINB8	P50452	374 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	CLCNKA	P51800	687 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	ATXN3	P54252	364 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	RAB10	P61026	200 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	IL9R	Q01113	521 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	PLOD1	Q02809	727 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	ZNF460	Q14592	562 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SF3A2	Q15428	464 aa	Known RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	SHB	Q15464	509 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	ZKSCAN8	Q15776	578 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	ZNF658B	Q4V348	819 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	ACSBG2	Q5FVE4	666 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	METRNL	Q641Q3	311 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SLC30A9	Q6PML9	568 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	TIFAB	Q6ZNK6	161 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	GKN2	Q86XP6	184 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	ZNF548	Q8NEK5	533 aa	Predicted RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	OR2I1P	Q8NGU4	316 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	CENPH	Q9H3R5	247 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	VIPAS39	Q9H9C1	493 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	IL21R	Q9HBE5	538 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	POPDC3	Q9HBV1	291 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SYTL2	Q9HCH5	934 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	SNX15	Q9NRS6	342 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	LGALS13	Q9UHV8	139 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	TLK1	Q9UKI8	766 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	ACSL5	Q9ULC5	683 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	DOLK	Q9UPQ8	538 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	ASCC3	Q8N3C0	2202 aa	Known RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	RIF1	Q5UIP0	2472 aa	Known RBP	12	□□□□□ -0.49
SDC1-206	ENST00000482879	VPS13A	Q96RL7	3174 aa		12	□□□□□ -0.49
SDC1-206	ENST00000482879	USP34	Q70CQ2	3546 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	PRR19	A6NJB7	356 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	FOXO6	A8MYZ6	492 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	PROB1	E7EW31	1015 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	MAP2K7	O14733	419 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	YKT6	O15498	198 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	LRP3	O75074	770 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	SLCO2B1	O94956	709 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	ALDOA	P04075	364 aa	Known RBP	11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	MPO	P05164	745 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	ANXA6	P08133	673 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	RPL10	P27635	214 aa	Known RBP	11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	PDHA2	P29803	388 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	RGS4	P49798	205 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	CCT8	P50990	548 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	IL2	P60568	153 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	RPA4	Q13156	261 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	SEPT7	Q16181	437 aa	Known RBP	11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	TAF1B	Q53T94	588 aa	Predicted RBP	11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	TMEM207	Q6UWW9	146 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	XKR5	Q6UX68	686 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	VRK3	Q8IV63	474 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	CPNE9	Q8IYJ1	553 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	SDR16C5	Q8N3Y7	309 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	MZB1	Q8WU39	189 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	EEF1AKMT1	Q8WVE0	214 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	WWP1	Q9H0M0	922 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	VPS11	Q9H270	941 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	GPAM	Q9HCL2	828 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	PRDM8	Q9NQV8	689 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	SEMA4G	Q9NTN9	838 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	ZNF446	Q9NWS9	450 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	UCKL1	Q9NWZ5	548 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	TAAR2	Q9P1P5	351 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	TBC1D29	Q9UFV1	150 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	TSR3	Q9UJK0	312 aa	Known RBP	11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	PSMD13	Q9UNM6	376 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	CDYL	Q9Y232	598 aa		11.99	□□□□□ -0.49
SDC1-206	ENST00000482879	CSNK1G3	Q9Y6M4	447 aa		11.99	□□□□□ -0.49

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