RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ALDH3A2P51648 485 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 PLA2G16P53816 162 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 NOL9Q5SY16 702 aaKnown RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 SDE2Q6IQ49 451 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 LBX2Q6XYB7 198 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 PLEKHM3Q6ZWE6 761 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 SPATA19Q7Z5L4 167 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TMEM135Q86UB9 458 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 SCML4Q8N228 414 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 SLC13A3Q8WWT9 602 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TMEM203Q969S6 136 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 EBPLQ9BY08 206 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TBC1D14Q9P2M4 693 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 UBA2Q9UBT2 640 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 TMED5Q9Y3A6 229 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZNF451Q9Y4E5 1061 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 N4BP2Q86UW6 1770 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 FAM240BA0A1B0GVZ2 78 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 BCAS1O75363 584 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 CDK14O94921 469 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 C1RP00736 705 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 PKMP14618 531 aaKnown RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 CD247P20963 164 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ITPKAP23677 461 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 KRT20P35900 424 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 HPCAL1P37235 193 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 MAD2L1Q13257 205 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 PTGR1Q14914 329 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 UAP1L1Q3KQV9 507 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TIMM50Q3ZCQ8 353 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 CTXN3Q4LDR2 81 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TPRG1LQ5T0D9 272 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 RNF219Q5W0B1 726 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 LIX1Q8N485 282 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 DNAJC5GQ8N7S2 189 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZFP90Q8TF47 636 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 HMCESQ96FZ2 354 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 CAPN10Q9HC96 672 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TLR8Q9NR97 1041 aaKnown RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 ABCC13Q9NSE7 274 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZNF222Q9UK12 451 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 POU2F3Q9UKI9 436 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 RAB23Q9ULC3 237 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZNF510Q9Y2H8 683 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 J3KR12 359 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 OTCP00480 354 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 GNPDA1P46926 289 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 SLC11A2P49281 568 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 ZNF157P51786 506 aaPredicted RBP13.33□□□□□ -0.27
USP42-206ENST00000479544 RPS7P62081 194 aaKnown RBP13.33□□□□□ -0.27
USP42-206ENST00000479544 TIGD6Q17RP2 521 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 PDE12Q6L8Q7 609 aaKnown RBP13.33□□□□□ -0.27
USP42-206ENST00000479544 DOK6Q6PKX4 331 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 TRUB1Q8WWH5 349 aaKnown RBP13.33□□□□□ -0.27
USP42-206ENST00000479544 KCNC2Q96PR1 638 aa13.33□□□□□ -0.27
USP42-206ENST00000479544 DPYSL4O14531 572 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 MATN3O15232 486 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 FGF10O15520 208 aaPredicted RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 TBX18O95935 607 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 OPN1SWP03999 348 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 CDH1P12830 882 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 RFC2P35250 354 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 HLCSP50747 726 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 PTPN5P54829 565 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ATP6V0D1P61421 351 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 GRM2Q14416 872 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 KIAA0930Q6ICG6 404 aaPredicted RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 CYP20A1Q6UW02 462 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 LINGO4Q6UY18 593 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 CLEC20AQ6ZU45 233 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 KIAA0408Q6ZU52 694 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 NPWQ8N729 165 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 OR8H1Q8NGG4 311 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 PHF10Q8WUB8 498 aaKnown RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 ANKRD49Q8WVL7 239 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ZYG11BQ9C0D3 744 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TIGARQ9NQ88 270 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 NKIRAS2Q9NYR9 191 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TMEM9Q9P0T7 183 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ERGIC3Q9Y282 383 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 DNAJC15Q9Y5T4 150 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 DNMT3AQ9Y6K1 912 aaPredicted RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 C17orf102A2RUQ5 167 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ZW10O43264 779 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 DFNA5O60443 496 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 MATN1P21941 496 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 RAB15P59190 212 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 KRT33BQ14525 404 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 PABPC1LQ4VXU2 614 aaKnown RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 PTCHD4Q6ZW05 846 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ZNF534Q76KX8 674 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 FRS2Q8WU20 508 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ASZ1Q8WWH4 475 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 CDCA5Q96FF9 252 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 PCYT2Q99447 389 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TTYH2Q9BSA4 534 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 ATG10Q9H0Y0 220 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 LRTM1Q9HBL6 345 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.33□□□□□ -0.28
USP42-206ENST00000479544 COQ3Q9NZJ6 369 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms