RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SCAMP1O15126 338 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 HCRTR2O43614 444 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 BUD23O43709 281 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 NDUFS3O75489 264 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 PRG2P13727 222 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 GABRB1P18505 474 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 TLX1P31314 330 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 RAD52P43351 418 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 FASLGP48023 281 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 AIMP2Q13155 320 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 ZSCAN23Q3MJ62 389 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 CDONQ4KMG0 1287 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 RAB41Q5JT25 222 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 PLEKHS1Q5SXH7 462 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 DCST1Q5T197 706 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 JADE1Q6IE81 842 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 BHLHB9Q6PI77 547 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 ENOSF1Q7L5Y1 443 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 PIWIL4Q7Z3Z4 852 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 TICAM1Q8IUC6 712 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 C17orf53Q8N3J3 647 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 RDM1Q8NG50 284 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 OR14L1PQ8NHC6 308 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC44A1Q8WWI5 657 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 ORAI1Q96D31 301 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 CALML4Q96GE6 196 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 PGAM5Q96HS1 289 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 FOXN4Q96NZ1 517 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 ZNF300Q96RE9 604 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 IWS1Q96ST2 819 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 NCAPGQ9BPX3 1015 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 SRSF8Q9BRL6 282 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 MCRIP2Q9BUT9 160 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 BICC1Q9H694 974 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 ANKEF1Q9NU02 776 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 FBXL17Q9UF56 701 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 NRBP1Q9UHY1 535 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 NENFQ9UMX5 172 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 SESN1Q9Y6P5 492 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 MAU2Q9Y6X3 613 aa2.89□□□□□ -1.95
CCDC88A-212ENST00000474059 A0A1W2PPI3 338 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 C1orf226A1L170 272 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 A6NL46 340 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SH2B2O14492 632 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 VCYO14598 125 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 TMCC2O75069 709 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 WISP2O76076 250 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 PGM3O95394 542 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 RB1P06400 928 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 GCH1P30793 250 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 AHRP35869 848 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 PIK3CAP42336 1068 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 CLDN20P56880 219 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SNX16P57768 344 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 EPS8Q12929 822 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 IKQ13123 557 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 KIR2DS3Q14952 304 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 NAB2Q15742 525 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ASTE1Q2TB18 679 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 KIAA1644Q3SXP7 199 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SOWAHCQ53LP3 525 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 LRIF1Q5T3J3 769 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 CFAP58Q5T655 872 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SIGIRRQ6IA17 410 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 PQLC2Q6ZP29 291 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 CFAP77Q6ZQR2 320 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 MFSD6Q6ZSS7 791 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SEPT14Q6ZU15 432 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 GALNT5Q7Z7M9 940 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 TEX11Q8IYF3 940 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 TAGAPQ8N103 731 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ZNF843Q8N446 348 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 LINC00612Q8N6U2 182 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 HJURPQ8NCD3 748 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 PPP4R1Q8TF05 950 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ELMOD3Q96FG2 381 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 OR2A14Q96R47 310 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ACOX2Q99424 681 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SEPT5Q99719 369 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 PKP2Q99959 881 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 MXD3Q9BW11 206 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 MAK16Q9BXY0 300 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC28A3Q9HAS3 691 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ZNF71Q9NQZ8 489 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SETD4Q9NVD3 440 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 MARCH4Q9P2E8 410 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SUCLA2Q9P2R7 463 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 JRKLQ9Y4A0 524 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ZHX2Q9Y6X8 837 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 SMCHD1A6NHR9 2005 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 ARHGEF40Q8TER5 1519 aa2.88□□□□□ -1.95
CCDC88A-212ENST00000474059 CROCCQ5TZA2 2017 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 A0A1W2PP11 408 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 CDRT15L2A8MXV6 281 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 HS6ST1O60243 411 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 JRKO75564 520 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 PDE9AO76083 593 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 BEST1O76090 585 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 STARD3NLO95772 234 aa2.87□□□□□ -1.95
CCDC88A-212ENST00000474059 HSP90AA1P07900 732 aaKnown RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms