RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ARL5AQ9Y689 179 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MYBPHLA2RUH7 354 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 NPEPPSL1A6NEC2 478 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 MGEA5O60502 916 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 CYP7B1O75881 506 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PRKCAP17252 672 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 EDNRBP24530 442 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 GRK5P34947 590 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 FOXD4Q12950 439 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 C6orf136Q5SQH8 315 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PAQR3Q6TCH7 311 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 Q6ZPB1 254 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 OR2T12Q8NG77 320 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 SMOQ99835 787 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 RUBCNLQ9H714 662 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 NECTIN3Q9NQS3 549 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 SMPD4Q9NXE4 827 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 HOXC10Q9NYD6 342 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 RNF112Q9ULX5 631 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 NEUROG3Q9Y4Z2 214 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 POLR3HQ9Y535 204 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 A0A0U1RQS6 177 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 MYO1GB0I1T2 1018 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 FAM20BO75063 409 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 CD4P01730 458 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 ST13P50502 369 aaKnown RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 GEMP55040 296 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 LCP2Q13094 533 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PTGR1Q14914 329 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 GCNT7Q6ZNI0 430 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 CEP68Q76N32 757 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PARP16Q8N5Y8 322 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 ZMIZ2Q8NF64 920 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 OR13C4Q8NGS5 318 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 CLHC1Q8NHS4 586 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 SPATA17Q96L03 361 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 NEDD4LQ96PU5 975 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 SMIM14Q96QK8 99 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 ATOH8Q96SQ7 321 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 RBM4BQ9BQ04 359 aaKnown RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 ZBED2Q9BTP6 218 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 RBM4Q9BWF3 364 aaKnown RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 BBS2Q9BXC9 721 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PRRG3Q9BZD7 231 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 ACTL8Q9H568 366 aa11.54□□□□□ -0.56
CPSF3-202ENST00000460593 EIF2B4Q9UI10 523 aaKnown RBP11.54□□□□□ -0.56
CPSF3-202ENST00000460593 PARP14Q460N5 1801 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 A0A096LPI6 279 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ECI2O75521 394 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 HOXD8P13378 290 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NAT1P18440 290 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 GADD45AP24522 165 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 C21orf33P30042 268 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TGFBR2P37173 567 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PGFP49763 221 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 FCGRTP55899 365 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CDC20Q12834 499 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ZBTB6Q15916 424 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 FAM187BQ17R55 369 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 RGMBQ6NW40 437 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 FKBP9P1Q75LS8 142 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NECAB2Q7Z6G3 386 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NIM1KQ8IY84 436 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 OR7G1Q8NGA0 311 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 BLOC1S5Q8TDH9 187 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 RHBDF1Q96CC6 855 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 OSMRQ99650 979 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 AS3MTQ9HBK9 375 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ACOT13Q9NPJ3 140 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CRTAC1Q9NQ79 661 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ENTPD7Q9NQZ7 604 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 SLC6A13Q9NSD5 602 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ERVK13-1Q9NX77 482 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 OSGIN1Q9UJX0 560 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NAALAD2Q9Y3Q0 740 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PKP3Q9Y446 797 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PCM1Q15154 2024 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 SMIM28A0A1B0GU29 152 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 AGAP5A6NIR3 686 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TULP3O75386 442 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NDST3O95803 873 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CYP11A1P05108 521 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TUFMP49411 452 aaKnown RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 SERPINH1P50454 418 aaKnown RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CRISP3P54108 245 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ARPP19P56211 112 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CYP4F2P78329 520 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 SLC35A2P78381 396 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CYP4F3Q08477 520 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TRAF3Q13114 568 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF404Q494X3 552 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 Q6ZSR9 355 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 SVOPQ8N4V2 548 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TP53I13Q8NBR0 393 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PJA1Q8NG27 643 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NTAN1Q96AB6 310 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 Q96MT0 163 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 NECTIN4Q96NY8 510 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TMEM246Q9BRR3 403 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms