RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	CCNI2	Q6ZMN8	369 aa	Predicted RBP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZNF574	Q6ZN55	896 aa	Predicted RBP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	CTAGE6	Q86UF2	777 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	KCNMB4	Q86W47	210 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	CTAGE4	Q8IX94	777 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	CFAP206	Q8IYR0	622 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	FBXO36	Q8NEA4	188 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	SLC30A3	Q99726	388 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	NUDT22	Q9BRQ3	303 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	TUBB2B	Q9BVA1	445 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	LRRN3	Q9H3W5	708 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	L2HGDH	Q9H9P8	463 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	RDH14	Q9HBH5	336 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	EPB41L5	Q9HCM4	733 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	SLC40A1	Q9NP59	571 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	SMYD2	Q9NRG4	433 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	TMEM9	Q9P0T7	183 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	CRYL1	Q9Y2S2	319 aa		10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZFC3H1	O60293	1989 aa	Known RBP	10.04	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZFHX4	Q86UP3	3567 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	PTPRB	P23467	1997 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	UBA6	A0AVT1	1052 aa	Predicted RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	OR5K4	A6NMS3	321 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	RHPN2P1	A8MT19	583 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZNF500	O60304	480 aa	Predicted RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CS	O75390	466 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GPC4	O75487	556 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	NDUFS3	O75489	264 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	HAUS5	O94927	633 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	TPBGL	P0DKB5	382 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	MTHFD1	P11586	935 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	VCL	P18206	1134 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	PAM	P19021	973 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	AOAH	P28039	575 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ACADL	P28330	430 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ALDH4A1	P30038	563 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	FMO4	P31512	558 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	PGGT1B	P53609	377 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CSE1L	P55060	971 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GPX6	P59796	221 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GUCY2D	Q02846	1103 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	BOP1	Q14137	746 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GPR18	Q14330	331 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GBX1	Q14549	363 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ISX	Q2M1V0	245 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	SPANXN3	Q5MJ09	141 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	MRNIP	Q6NTE8	343 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CNST	Q6PJW8	725 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	TMEM26	Q6ZUK4	368 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	USP53	Q70EK8	1073 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	TMPRSS12	Q86WS5	348 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	SLITRK4	Q8IW52	837 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CNTN4	Q8IWV2	1026 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ZBED8	Q8IZ13	594 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	OTUD6B	Q8N6M0	293 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	C2CD4A	Q8NCU7	369 aa	Predicted RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	BBOF1	Q8ND07	529 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	OR6C4	Q8NGE1	309 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GIMAP7	Q8NHV1	300 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ELMO1	Q92556	727 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	GATA6	Q92908	595 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	FAM136A	Q96C01	138 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	LRRC39	Q96DD0	335 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CERS2	Q96G23	380 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	FOXP3	Q9BZS1	431 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	RAB17	Q9H0T7	212 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	SYNDIG1	Q9H7V2	258 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	SAYSD1	Q9NPB0	183 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	IARS2	Q9NSE4	1012 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	EVA1B	Q9NVM1	165 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	MOCS1	Q9NZB8	636 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	FBXO5	Q9UKT4	447 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	CLCA2	Q9UQC9	943 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	UTP11	Q9Y3A2	253 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	NEUROG3	Q9Y4Z2	214 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	ENTPD2	Q9Y5L3	495 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	PSAT1	Q9Y617	370 aa		10.03	□□□□□ -0.8
MRPL55-223	ENST00000459783	KMT2B	Q9UMN6	2715 aa	Predicted RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	BAHCC1	Q9P281	2608 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	LILRA5	A6NI73	299 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	TTC4	O95801	387 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	FTH1	P02794	183 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	CAPNS1	P04632	268 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	SLC35G4	P0C7Q5	338 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	OR56A5	P0C7T3	313 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	CDK4	P11802	303 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	SSTR1	P30872	391 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	GPR3	P46089	330 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	ADAR	P55265	1226 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	PPP1CA	P62136	330 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	ZFP36L1	Q07352	338 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	CALCOCO2	Q13137	446 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	THOC5	Q13769	683 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	FRG1	Q14331	258 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	AMZ1	Q400G9	498 aa		10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	RBM20	Q5T481	1227 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-223	ENST00000459783	TEDDM1	Q5T9Z0	273 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms