RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 GPR150Q8NGU9 434 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 GRK7Q8WTQ7 553 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 ZNF778Q96MU6 729 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 COG4Q9H9E3 785 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 CHRAC1Q9NRG0 131 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 OGFRQ9NZT2 677 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 ANAPC5Q9UJX4 755 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 ACSL6Q9UKU0 697 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 HEBP2Q9Y5Z4 205 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 CFAP20Q9Y6A4 193 aaKnown RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 COLEC10Q9Y6Z7 277 aa14.86□□□□□ -0.03
LIMS3-201ENST00000437679 MN1Q10571 1320 aaPredicted RBP14.86□□□□□ -0.03
LIMS3-201ENST00000437679 USP27XA6NNY8 438 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 EFCAB7A8K855 629 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 B4E171 279 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 C9orf172C9J069 976 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 IFRD1O00458 451 aaPredicted RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 CAPN5O15484 640 aaPredicted RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 PHF2O75151 1096 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 C9P02748 559 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 FTH1P02794 183 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 TCP1P17987 556 aaKnown RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 CD82P27701 267 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 TSPAN7P41732 249 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 CAPZBP47756 277 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 UCNP55089 124 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 CRADDP78560 199 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 RPA4Q13156 261 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 AARS2Q5JTZ9 985 aaKnown RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 PACS1Q6VY07 963 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 PDZD3Q86UT5 571 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 LILRA3Q8N6C8 439 aaPredicted RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 SPDYE1Q8NFV5 336 aaPredicted RBP14.85□□□□□ -0.03
LIMS3-201ENST00000437679 ZFPM2Q8WW38 1151 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 RSC1A1Q92681 617 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 ZDHHC12Q96GR4 267 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 SGSM3Q96HU1 749 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 C9orf72Q96LT7 481 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 RMDN2Q96LZ7 410 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 TGM7Q96PF1 710 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 WDR70Q9NW82 654 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 OCIAD1Q9NX40 245 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 SLC39A1Q9NY26 324 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 ZFHX4Q86UP3 3567 aa14.85□□□□□ -0.03
LIMS3-201ENST00000437679 TCRBV7S3A2A0A539 114 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 ZNF185O15231 689 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 RASSF9O75901 435 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 ANKRD34CP0C6C1 535 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 OR56A5P0C7T3 313 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 MGAT1P26572 445 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 NDUFS1P28331 727 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 MAGEA6P43360 314 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 FNTAP49354 379 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 GFERP55789 205 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 TMPRSS3P57727 454 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 RAB15P59190 212 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 GNG11P61952 73 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 CLN3Q13286 438 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 KCNJ11Q14654 390 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 KCTD19Q17RG1 926 aaPredicted RBP14.84□□□□□ -0.03
LIMS3-201ENST00000437679 CAPRIN2Q6IMN6 1127 aaKnown RBP14.84□□□□□ -0.03
LIMS3-201ENST00000437679 IRGCQ6NXR0 463 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 DUS1LQ6P1R4 473 aaKnown RBP14.84□□□□□ -0.03
LIMS3-201ENST00000437679 XKR5Q6UX68 686 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 ZNF534Q76KX8 674 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 ART4Q93070 314 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 CRELD1Q96HD1 420 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 DDA1Q9BW61 102 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 ASPSCR1Q9BZE9 553 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 MRM3Q9HC36 420 aaKnown RBP14.84□□□□□ -0.03
LIMS3-201ENST00000437679 CATSPERZQ9NTU4 200 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 SYBUQ9NX95 663 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 FOXJ2Q9P0K8 574 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 EPHA6Q9UF33 1036 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 PYCARDQ9ULZ3 195 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 PCDHB11Q9Y5F2 797 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 PCDHGA3Q9Y5H0 932 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 PRSS21Q9Y6M0 314 aa14.84□□□□□ -0.03
LIMS3-201ENST00000437679 LIN7AO14910 233 aaPredicted RBP14.83□□□□□ -0.04
LIMS3-201ENST00000437679 TOX3O15405 576 aaPredicted RBP14.83□□□□□ -0.04
LIMS3-201ENST00000437679 LIPCP11150 499 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 LEPRP48357 1165 aaKnown RBP14.83□□□□□ -0.04
LIMS3-201ENST00000437679 CD151P48509 253 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 MC2RQ01718 297 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 DCAF12Q5T6F0 453 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 JPH3Q8WXH2 748 aaPredicted RBP14.83□□□□□ -0.04
LIMS3-201ENST00000437679 ELMO1Q92556 727 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 FERD3LQ96RJ6 166 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 KIFC1Q9BW19 673 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 TSSK1BQ9BXA7 367 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 RAB33BQ9H082 229 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 OR52A5Q9H2C5 316 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 PRORYQ9H606 182 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 KIR3DX1Q9H7L2 352 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 TREX1Q9NSU2 369 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 ITPR1Q14643 2758 aa14.83□□□□□ -0.04
LIMS3-201ENST00000437679 CD3EAPO15446 510 aaKnown RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 OR1I1O60431 355 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 NMBRP28336 390 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 PREPP48147 710 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms