RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CNOT6Q9ULM6 557 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 RAI2Q9Y5P3 530 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 A0A1B0GVM2 712 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 TCAF2A6NFQ2 919 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 STK16O75716 305 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 STBD1O95210 358 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ATP6V1G2O95670 118 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MT-ND5P03915 603 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 IFNW1P05000 195 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SERPINA6P08185 405 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PECAM1P16284 738 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 GRM5P41594 1212 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 RBM34P42696 430 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NFKB2Q00653 900 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SSX6Q7RTT6 188 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 GPAT4Q86UL3 456 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 POU5F2Q8N7G0 328 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF709Q8N972 641 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ABHD5Q8WTS1 349 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 KAT2AQ92830 837 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SLC2A4RGQ9NR83 387 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PNPLA3Q9NST1 481 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 BAZ2AQ9UIF9 1905 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SLC31A1O15431 190 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 GOT1P17174 413 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZIK1Q3SY52 487 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 RUNDC3AQ59EK9 446 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PAMR1Q6UXH9 720 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 CPNE9Q8IYJ1 553 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 VANGL1Q8TAA9 524 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FCRL2Q96LA5 508 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 AP1S3Q96PC3 154 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 HEPHQ9BQS7 1158 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 BRF2Q9HAW0 419 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 LYARQ9NX58 379 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MAP4K5Q9Y4K4 846 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 LTN1O94822 1766 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 OR2AG2A6NM03 316 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FABP3P05413 133 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 APLP1P51693 650 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PKNOX1P55347 436 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 XIAPP98170 497 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 CCINQ13939 588 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 C15orf59Q2T9L4 293 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ALG10BQ5I7T1 473 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 UBXN11Q5T124 520 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ARL9Q6T311 187 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PIGZQ86VD9 579 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NOA1Q8NC60 698 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 CAMKVQ8NCB2 501 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PHF12Q96QT6 1004 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 KXD1Q9BQD3 176 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MRIQ9BWK5 157 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FAM83DQ9H4H8 585 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 RC3H2Q9HBD1 1191 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 POU2F3Q9UKI9 436 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 BCORL1Q5H9F3 1711 aa6.77□□□□□ -1.32
SCN1A-204ENST00000423058 CCRL2O00421 344 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MUSKO15146 869 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PDPK1O15530 556 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 IFNA21P01568 189 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ALOX5P09917 674 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 COX4I1P13073 169 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SLC1A2P43004 574 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GALK1P51570 392 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 POLR2JP52435 117 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PSME3P61289 254 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 MC1RQ01726 317 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 PLP2Q04941 152 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CDK10Q15131 360 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM119Q4V9L6 283 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CAMK1GQ96NX5 476 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CLK4Q9HAZ1 481 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 KLRF1Q9NZS2 232 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ADAM18Q9Y3Q7 739 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ASB3Q9Y575 518 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 DUSP10Q9Y6W6 482 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 LMTK2Q8IWU2 1503 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NPIPA5E9PKD4 350 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CPNE3O75131 537 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NDST3O95803 873 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CYP3A5P20815 502 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NSG1P42857 185 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 GBX2P52951 348 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TAF10Q12962 218 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 EIF5AL1Q6IS14 154 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 HMGB4Q8WW32 186 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 KLHL5Q96PQ7 755 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 SNRNP25Q9BV90 132 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 B4GALT7Q9UBV7 327 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 NPIPA1Q9UND3 350 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 KCNIP3Q9Y2W7 256 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 TRAF6Q9Y4K3 522 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 FAM240BA0A1B0GVZ2 78 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 AP5Z1O43299 807 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 DUSP11O75319 330 aaKnown RBP6.77□□□□□ -1.33
SCN1A-204ENST00000423058 ALPPP05187 535 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 S100A2P29034 98 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 CCR10P46092 362 aa6.77□□□□□ -1.33
SCN1A-204ENST00000423058 YBEYP58557 167 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms