RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 ALKBH2Q6NS38 261 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 KIAA1161Q6NSJ0 714 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 DRICH1Q6PGQ1 229 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 CPNE9Q8IYJ1 553 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PHF10Q8WUB8 498 aaKnown RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 NPY6RQ99463 290 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 FUT8Q9BYC5 575 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 DNAAF2Q9NVR5 837 aaKnown RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 TMEM189-UBE2V1I3L0A0 370 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 HCRTO43612 131 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 APBB3O95704 486 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PROZP22891 400 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 RCN1Q15293 331 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 CMC1Q7Z7K0 106 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 DGAT2Q96PD7 388 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 GAL3ST4Q96RP7 486 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 S100A13Q99584 98 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 C1orf50Q9BV19 199 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 RP1L1Q8IWN7 2480 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 BMP7P18075 431 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 DMTNQ08495 405 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PAFAH1B3Q15102 231 aaKnown RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PTCRAQ6ISU1 281 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 SCIMPQ6UWF3 145 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 RNF145Q96MT1 663 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 ZIC5Q96T25 663 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PDLIM7Q9NR12 457 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 R3HDM2Q9Y2K5 976 aaKnown RBP10.59□□□□□ -0.71
PTCH1-206ENST00000421141 PCDHGA2Q9Y5H1 932 aa10.59□□□□□ -0.71
PTCH1-206ENST00000421141 OR5K4A6NMS3 321 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SHBGP04278 402 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 ATP5A1P25705 553 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SOX6P35712 828 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 RPL4P36578 427 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 ZDHHC13Q8IUH4 622 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 DNASE1L2Q92874 299 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 LMAN1LQ9HAT1 526 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 NECTIN3Q9NQS3 549 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 RPL10P27635 214 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 PGDP52209 483 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CST6Q15828 149 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CCDC142Q17RM4 750 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 OXR1Q8N573 874 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CPT1BQ92523 772 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 XYLT2Q9H1B5 865 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 IPPKQ9H8X2 491 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SPAG4Q9NPE6 437 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 PNO1Q9NRX1 252 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 NDUFS4O43181 175 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 C2P06681 752 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 ARHGAP40Q5TG30 622 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 RPLP0P6Q8NHW5 317 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SGIP1Q9BQI5 828 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 DUSP12Q9UNI6 340 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 FAM221BA6H8Z2 402 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 HDAC3O15379 428 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 DUX1O43812 170 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 ADAMTS4O75173 837 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 LIMK2P53671 638 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SOX4Q06945 474 aaPredicted RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 MACC1Q6ZN28 852 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SLC29A4Q7RTT9 530 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 DEFB123Q8N688 67 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 TMEM125Q96AQ2 219 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 MARK4Q96L34 752 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 DEPDC7Q96QD5 511 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 OSBPL10Q9BXB5 764 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 RNGTTO60942 597 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CNOT3O75175 753 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CHIT1Q13231 466 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 TCHHL1Q5QJ38 904 aaPredicted RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 EPS8L2Q9H6S3 715 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 RAB21Q9UL25 225 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 PTGESO14684 152 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SEMA4FO95754 770 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 ELOAQ14241 798 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 SNX32Q86XE0 403 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 MRPL38Q96DV4 380 aaKnown RBP10.58□□□□□ -0.72
PTCH1-206ENST00000421141 GPR34Q9UPC5 381 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 NINQ8N4C6 2090 aa10.58□□□□□ -0.72
PTCH1-206ENST00000421141 CEBPBP17676 345 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 MPIP34949 423 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 CA9Q16790 459 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 PRAMEF14Q5SWL7 426 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 PRAMEF13Q5VWM6 474 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 FSTL4Q6MZW2 842 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 EIF3MQ7L2H7 374 aaKnown RBP10.57□□□□□ -0.72
PTCH1-206ENST00000421141 CUZD1Q86UP6 607 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 GJD3Q8N144 294 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 ZNF527Q8NB42 609 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 RGMAQ96B86 450 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 SLC38A2Q96QD8 506 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 HCN4Q9Y3Q4 1203 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 POP7O75817 140 aaKnown RBP10.57□□□□□ -0.72
PTCH1-206ENST00000421141 LDLRP01130 860 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 FGFR3P22607 806 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 CCKBRP32239 447 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 FAM220AQ7Z4H9 259 aa10.57□□□□□ -0.72
PTCH1-206ENST00000421141 EXOSC8Q96B26 276 aaKnown RBP10.57□□□□□ -0.72
PTCH1-206ENST00000421141 NXNL1Q96CM4 212 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms