RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MAELQ96JY0 434 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 FSD1LQ9BXM9 530 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 OLA1Q9NTK5 396 aaKnown RBP6.47□□□□□ -1.37
USP40-202ENST00000409945 TMEM160Q9NX00 188 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 HMGXB4Q9UGU5 601 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 SCML2Q9UQR0 700 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 ZNF510Q9Y2H8 683 aa6.47□□□□□ -1.37
USP40-202ENST00000409945 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 XPO1O14980 1071 aaKnown RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 ESRRBO95718 433 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 TMIGD3P0DMS9 266 aaPredicted RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 HKR1P10072 659 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 APEHP13798 732 aaKnown RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 DRD4P21917 467 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 ADRA1DP25100 572 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 USP8P40818 1118 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CCR3P51677 355 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 RAD23BP54727 409 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 TPM4P67936 248 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 MRPS35P82673 323 aaKnown RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 COG7P83436 770 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 SIM2Q14190 667 aaPredicted RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 ANGPT1Q15389 498 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 ST3GAL2Q16842 350 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CCDC142Q17RM4 750 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 GOLGA7BQ2TAP0 167 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 C10orf120Q5SQS8 335 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 TEDDM1Q5T9Z0 273 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 SNX30Q5VWJ9 437 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 DGAT2L7PQ6IED9 249 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 TMEM150AQ86TG1 271 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 SLC4A11Q8NBS3 891 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CAVIN3Q969G5 261 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CYP2S1Q96SQ9 504 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 DCLK3Q9C098 648 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 INTS2Q9H0H0 1204 aaKnown RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 PDCL3Q9H2J4 239 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 EBF3Q9H4W6 596 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 USP29Q9HBJ7 922 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 UBE2TQ9NPD8 197 aaPredicted RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 TRIM36Q9NQ86 728 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CHORDC1Q9UHD1 332 aaPredicted RBP6.46□□□□□ -1.37
USP40-202ENST00000409945 TSPAN16Q9UKR8 245 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 FBXO4Q9UKT5 387 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 CPQQ9Y646 472 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 PTPRDP23468 1912 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 MIA3Q5JRA6 1907 aa6.46□□□□□ -1.37
USP40-202ENST00000409945 FAM92AA1XBS5 289 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 TJP3O95049 919 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 NXPH3O95157 252 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 OAS1P00973 400 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 CD72P21854 359 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 BUD31P41223 144 aaPredicted RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 ACADSBP45954 432 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 EEFSECP57772 596 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 TAS2R50P59544 299 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 MPP3Q13368 585 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 SLC12A1Q13621 1099 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 ZNF77Q15935 545 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 DPCR1Q3MIW9 517 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 CCDC70Q6NSX1 233 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 PAQR9Q6ZVX9 377 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 ZNF551Q7Z340 670 aaPredicted RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 CCDC186Q7Z3E2 898 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 BCDIN3DQ7Z5W3 292 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 PAF1Q8N7H5 531 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 MSANTD4Q8NCY6 345 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 RP9Q8TA86 221 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 REXO5Q96IC2 774 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 ZFYVE19Q96K21 471 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 EIF3CQ99613 913 aaKnown RBP6.46□□□□□ -1.38
USP40-202ENST00000409945 TUBGCP2Q9BSJ2 902 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 NDST4Q9H3R1 872 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 ECT2Q9H8V3 914 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 LMAN1LQ9HAT1 526 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 GTSE1Q9NYZ3 720 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 CLIC5Q9NZA1 410 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 IL37Q9NZH6 218 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 SLC12A4Q9UP95 1085 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 CCL26Q9Y258 94 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 NME7Q9Y5B8 376 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 DENND4CQ5VZ89 1909 aa6.46□□□□□ -1.38
USP40-202ENST00000409945 MUC6Q6W4X9 2439 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ZNF318Q5VUA4 2279 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 KCNJ18B7U540 433 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 M0QYV0 167 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 COCHO43405 550 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 PI15O43692 258 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 OLFM2O95897 454 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ONECUT2O95948 504 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TPM3P06753 285 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 RARGP13631 454 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TNFRSF1AP19438 455 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TKTL1P51854 596 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 COPB1P53618 953 aaKnown RBP6.45□□□□□ -1.38
USP40-202ENST00000409945 CACNA2D1P54289 1103 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 NHLH1Q02575 133 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 GAD2Q05329 585 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ZNF169Q14929 603 aaPredicted RBP6.45□□□□□ -1.38
USP40-202ENST00000409945 PON2Q15165 354 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms