RNA–Protein interactions for RNA: ENST00000394820.8

NFKB1-202, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NFKB1, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-202ENST00000394820 ERVK-6Q9BXR3 956 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 BEX2Q9BXY8 128 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 UGT2B28Q9BY64 529 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 POLR1EQ9GZS1 481 aaKnown RBP13.04□□□□□ -0.32
NFKB1-202ENST00000394820 IPPKQ9H8X2 491 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 CCM2LQ9NUG4 571 aaPredicted RBP13.04□□□□□ -0.32
NFKB1-202ENST00000394820 PBLDP30039 288 aaPredicted RBP13.04□□□□□ -0.32
NFKB1-202ENST00000394820 FAM214AQ32MH5 1076 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 SLCO4A1Q96BD0 722 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 CITED4Q96RK1 184 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 KCNS3Q9BQ31 491 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 KIFC1Q9BW19 673 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 EHD3Q9NZN3 535 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 SPASTQ9UBP0 616 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 PSME2Q9UL46 239 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 LRFN2Q9ULH4 789 aa13.04□□□□□ -0.32
NFKB1-202ENST00000394820 GPC6Q9Y625 555 aaPredicted RBP13.04□□□□□ -0.32
NFKB1-202ENST00000394820 A0A1B0GTL3 188 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 BCKDKO14874 412 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 SERPINA1P01009 418 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 S100A3P33764 101 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 ARSFP54793 590 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 RPS3AP61247 264 aaKnown RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 TAF10Q12962 218 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 C11orf96Q7Z7L8 435 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 SELENOMQ8WWX9 145 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 SOCS4Q8WXH5 440 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 MRGPRX2Q96LB1 330 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 APOLD1Q96LR9 279 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 FUNDC2Q9BWH2 189 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 FAIMQ9NVQ4 179 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 PDP1Q9P0J1 537 aaPredicted RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 C3orf18Q9UK00 162 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 OTOFQ9HC10 1997 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 PDZK1P1A8MUH7 402 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 HHLA1C9JL84 531 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 KPNA5O15131 536 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 B4GALT3O60512 393 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 TTKP33981 857 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 RCVRNP35243 200 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 NR4A2P43354 598 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 FCGRTP55899 365 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 DAG1Q14118 895 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 MED22Q15528 200 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 IGFN1Q86VF2 1251 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 FUNDC1Q8IVP5 155 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 PIK3C3Q8NEB9 887 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 OSER1Q9NX31 292 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 ACTR3BQ9P1U1 418 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 PMF1-BGLAPU3KQ54 211 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 CACNA1CQ13936 2221 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 ULK1O75385 1050 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 CLPXO76031 633 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 OPN1SWP03999 348 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 SBK3P0C264 359 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 CCDC159P0C7I6 412 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 OXCT1P55809 520 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 RPS24P62847 133 aaKnown RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 DUSP4Q13115 394 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 XKR4Q5GH76 650 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 DCDC5Q6ZRR9 648 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 SCD5Q86SK9 330 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 ISCA2Q86U28 154 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 DCP1BQ8IZD4 617 aaKnown RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 KRTCAP2Q8N6L1 136 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 RPL3LQ92901 407 aaKnown RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 ATG10Q9H0Y0 220 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 DUS2Q9NX74 493 aaKnown RBP13.03□□□□□ -0.32
NFKB1-202ENST00000394820 VPS28Q9UK41 221 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 POU2F3Q9UKI9 436 aa13.03□□□□□ -0.32
NFKB1-202ENST00000394820 A0A0U1RQF3 1178 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 GNG14A0A1W2PPG7 69 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 ZNF487B1APH4 448 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 F5H5T6 163 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 NDUFB5O43674 189 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 ITPKAP23677 461 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 VARSP26640 1264 aaKnown RBP13.02□□□□□ -0.32
NFKB1-202ENST00000394820 WEE1P30291 646 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 SHMT2P34897 504 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 TGFBR1P36897 503 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 SPANXN4Q5MJ08 99 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 CILP2Q8IUL8 1156 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 DENND1CQ8IV53 801 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 ZNF419Q96HQ0 510 aaPredicted RBP13.02□□□□□ -0.32
NFKB1-202ENST00000394820 ERVK-18Q9QC07 812 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 ARID1AO14497 2285 aa13.02□□□□□ -0.32
NFKB1-202ENST00000394820 MAFKO60675 156 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 SERPIND1P05546 499 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 GSTT2P0CG29 244 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 GSTT2BP0CG30 244 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 IGFBP5P24593 272 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 CCNCP24863 283 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 ZNF846Q147U1 533 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 NPTX1Q15818 432 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 SMN1Q16637 294 aaKnown RBP13.02□□□□□ -0.33
NFKB1-202ENST00000394820 ARMC4Q5T2S8 1044 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 DEPDC1Q5TB30 811 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 C17orf99Q6UX52 265 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 LYSMD3Q7Z3D4 306 aa13.02□□□□□ -0.33
NFKB1-202ENST00000394820 SERINC5Q86VE9 423 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms