RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SMAD9O15198 467 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 LDOC1O95751 146 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 FGF1P05230 155 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TNFSF9P41273 254 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CXCR3P49682 368 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 LCP2Q13094 533 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PRKD1Q15139 912 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CRY2Q49AN0 593 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RHBDF2Q6PJF5 856 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ITIH5Q86UX2 942 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PACRGLQ8N7B6 248 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 AP2M1Q96CW1 435 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 KREMEN1Q96MU8 473 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF317Q96PQ6 595 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 FUZQ9BT04 418 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 BICRAQ9NZM4 1560 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 IQGAP3Q86VI3 1631 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PDCD5O14737 125 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 KRT33AO76009 404 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RECQL4O94761 1208 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 GNALP38405 381 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 MATKP42679 507 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RHDQ02161 417 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM198Q66K66 360 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 DUS1LQ6P1R4 473 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TMPRSS11BQ86T26 416 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 UNC5BQ8IZJ1 945 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 HDDC3Q8N4P3 179 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 OR5B17Q8NGF7 314 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 FNDC8Q8TC99 324 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PORCNQ9H237 461 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 NPHS1O60500 1241 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 GATBO75879 557 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CLDN9O95484 217 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RGS8P57771 180 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 IFI44LQ53G44 452 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 NIPA1Q7RTP0 329 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 REPS2Q8NFH8 660 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 C9orf43Q8TAL5 461 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 THAP6Q8TBB0 222 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ADAMTS15Q8TE58 950 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 NKD2Q969F2 451 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TMBIM1Q969X1 311 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 HERC2P3Q9BVR0 1158 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF471Q9BX82 626 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 COMMD4Q9H0A8 199 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 KCNMB3Q9NPA1 279 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TAS2R3Q9NYW6 316 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM9Q9P0T7 183 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CMAHPQ9Y471 501 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TRAV6A0A075B6T7 132 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PDPK1O15530 556 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 CDRT1O95170 752 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 GIMD1P0DJR0 217 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 EFNA1P20827 205 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 RPP38P78345 283 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 FAM174BQ3ZCQ3 159 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM236Q5W0B7 351 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 FAAH2Q6GMR7 532 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF563Q8TA94 476 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MFSD3Q96ES6 412 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PFDN5Q99471 154 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 BEX2Q9BXY8 128 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 EBPLQ9BY08 206 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 RNF181Q9P0P0 153 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 SCAMP3O14828 347 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 INMTO95050 263 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 CLUP10909 449 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 STT3AP46977 705 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 RGS19P49795 217 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 GTF2H2Q13888 395 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 GTF2H2CQ6P1K8 395 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PCDH19Q8TAB3 1148 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 CCDC120Q96HB5 630 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM134Q9H6X4 195 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 ATP13A3Q9H7F0 1226 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 METTL8Q9H825 291 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 GLOD4Q9HC38 313 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 BRD7Q9NPI1 651 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TIGARQ9NQ88 270 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 KCNQ5Q9NR82 932 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 AAASQ9NRG9 546 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 RCOR3Q9P2K3 495 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MADDQ8WXG6 1647 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 XKRYO14609 159 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 HSPA7P48741 367 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 SNRPD1P62314 119 aaKnown RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 TARDBPQ13148 414 aaKnown RBP eCLIP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MARCH9Q86YJ5 346 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 FSTL5Q8N475 847 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 C12orf50Q8NA57 414 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-202ENST00000394243 OR2L2Q8NH16 312 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 C1orf216Q8TAB5 229 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 FBXL20Q96IG2 436 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 ERVK-11Q9UQG0 969 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 NFASCO94856 1347 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 MAGEB17A8MXT2 336 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 PER2O15055 1255 aa11.69□□□□□ -0.54
SYNPO-202ENST00000394243 OR4F21O95013 312 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms