RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SLC38A8A6NNN8 435 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 TOR1BO14657 336 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 INPP4BO15327 924 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CD40LGP29965 261 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 NR4A2P43354 598 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 ALDH3A2P51648 485 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 ARSFP54793 590 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 RAB10P61026 200 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 STX1BP61266 288 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 OLIG2Q13516 323 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SELPLGQ14242 412 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 C6orf141Q5SZD1 244 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CYHR1Q6ZMK1 362 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 TMEM150AQ86TG1 271 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CLIP4Q8N3C7 705 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 RDH12Q96NR8 316 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 ADNPQ9H2P0 1102 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 POMKQ9H5K3 350 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CCSER2Q9H7U1 834 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 NEK6Q9HC98 313 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 TNFRSF12AQ9NP84 129 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CHRAC1Q9NRG0 131 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 FNIP2Q9P278 1114 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 ZNF229Q9UJW7 825 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SCML2Q9UQR0 700 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PCDHA9Q9Y5H5 950 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 INSL5Q9Y5Q6 135 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SNX10Q9Y5X0 201 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PRRC2BQ5JSZ5 2229 aaKnown RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 A0A087X1B8 175 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 A0A0J9YYE9 177 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PRRG1O14668 218 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SNPHO15079 494 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 XYLBO75191 536 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 GSNP06396 782 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 EPCAMP16422 314 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SAT1P21673 171 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PCMT1P22061 227 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CXCR2P25025 360 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 NOS2P35228 1153 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 GRK3P35626 688 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 ZNF135P52742 658 aaPredicted RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 PGGT1BP53609 377 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 GP2P55259 537 aaKnown RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 CHRNEQ04844 493 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CRY1Q16526 586 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 COQ5Q5HYK3 327 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 SIGIRRQ6IA17 410 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 CUZD1Q86UP6 607 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 FAM20CQ8IXL6 584 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 C8orf59Q8N0T1 100 aaPredicted RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 SGCDQ92629 289 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 VPS33AQ96AX1 596 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 AURKBQ96GD4 344 aaPredicted RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 SLC30A3Q99726 388 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 TRIT1Q9H3H1 467 aaKnown RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 ZNF334Q9HCZ1 680 aaPredicted RBP10.98□□□□□ -0.65
CUX1-204ENST00000393824 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.98□□□□□ -0.65
CUX1-204ENST00000393824 PDE10AQ9Y233 779 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 FIS1Q9Y3D6 152 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PCDHGB1Q9Y5G3 927 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 IRAK3Q9Y616 596 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PMF1-BGLAPU3KQ54 211 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 A0A0C4DFX4 3053 aa10.98□□□□□ -0.65
CUX1-204ENST00000393824 PLXNA3P51805 1871 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 BRWD1Q9NSI6 2320 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 FAM72CH0Y354 149 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 M0R3G1 203 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 EEF2KO00418 725 aaKnown RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 NDUFS2O75306 463 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 USP12O75317 370 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 PRSS23O95084 383 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 NADKO95544 446 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 AHSGP02765 367 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ALPLP05186 524 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ENO2P09104 434 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 ACVR2AP27037 513 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 YWHAQP27348 245 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CD68P34810 354 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 AVPR1AP37288 418 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 ERVK-21P61565 698 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CDH17Q12864 832 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 TOP3AQ13472 1001 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 EIF4EBP2Q13542 120 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 DAG1Q14118 895 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 GEN1Q17RS7 908 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 FAM72AQ5TYM5 149 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 TTC23Q5W5X9 447 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 BTBD8Q5XKL5 378 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 TPGS2Q68CL5 300 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 NAPEPLDQ6IQ20 393 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 FAM72DQ6L9T8 149 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 TAS2R42Q7RTR8 314 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 FAM72BQ86X60 149 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 CCDC117Q8IWD4 279 aaPredicted RBP10.97□□□□□ -0.65
CUX1-204ENST00000393824 TCEAL8Q8IYN2 117 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 KIAA2013Q8IYS2 634 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 NETO2Q8NC67 525 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 OR13J1Q8NGT2 312 aa10.97□□□□□ -0.65
CUX1-204ENST00000393824 BPIFB1Q8TDL5 484 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms