RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RPS27LQ71UM5 84 aaKnown RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TUBGCP5Q96RT8 1024 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 NELL2Q99435 816 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 CDH19Q9H159 772 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PIF1Q9H611 641 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PRSS16Q9NQE7 514 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 ANKRD12Q6UB98 2062 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 E9PBE3 544 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TK2O00142 265 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 KLHL41O60662 606 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 H2AFYO75367 372 aaKnown RBP10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TGDSO95455 350 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 IGHA2P01877 340 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ANXA5P08758 320 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SRFP11831 508 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 GDF5P43026 501 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 RAB10P61026 200 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TMEM115Q12893 351 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ART3Q13508 389 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 CTC1Q2NKJ3 1217 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 FOXB2Q5VYV0 432 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF614Q8N883 585 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SMRP1Q8NCR6 262 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SP7Q8TDD2 431 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-205ENST00000392004 RELTQ969Z4 430 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ACSS3Q9H6R3 686 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 NDUFA13Q9P0J0 144 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 HSFX1Q9UBD0 423 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TAGLN3Q9UI15 199 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SARDHQ9UL12 918 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SOX13Q9UN79 622 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 R4GN57 208 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 UNC13CQ8NB66 2214 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 GRID2O43424 1007 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 RBP1P09455 135 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ETS2P15036 469 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SOAT1P35610 550 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 LRRC74AQ0VAA2 488 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 PRKD1Q15139 912 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SPDYE7PQ495Y7 208 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 PPP4R4Q6NUP7 873 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TMPRSS11BQ86T26 416 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 KBTBD6Q86V97 674 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 MARK4Q96L34 752 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 ZBTB18Q99592 522 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 FAM86C1Q9NVL1 165 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 TMCO1Q9UM00 188 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 SLC27A6Q9Y2P4 619 aa10.15□□□□□ -0.78
COL6A3-205ENST00000392004 FAM237BA0A1B0GVD1 139 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 TCN1P20061 433 aaPredicted RBP10.15□□□□□ -0.79
COL6A3-205ENST00000392004 RPIAP49247 311 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 RPS21P63220 83 aaKnown RBP10.15□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF33AQ06730 810 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 LRIT3Q3SXY7 679 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 ANKS6Q68DC2 871 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 CYP2U1Q7Z449 544 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 ELSPBP1Q96BH3 223 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 NUF2Q9BZD4 464 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 NMUR2Q9GZQ4 415 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 RDH14Q9HBH5 336 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 SH3BP4Q9P0V3 963 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 PCDHGB4Q9UN71 923 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 TBC1D30Q9Y2I9 924 aa10.15□□□□□ -0.79
COL6A3-205ENST00000392004 KANSL1LA0AUZ9 987 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TSPAN6O43657 245 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 KDM1AO60341 852 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CACNG3O60359 315 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ADH1BP00325 375 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 AHSGP02765 367 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 LTA4HP09960 611 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 GRIA4P48058 902 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CDC16Q13042 620 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 DEFB133Q30KQ1 61 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 XKR6Q5GH73 641 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SMYD5Q6GMV2 418 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ARCQ7LC44 396 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 HSD11B1LQ7Z5J1 315 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CAND1Q86VP6 1230 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 PLD3Q8IV08 490 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CPXM2Q8N436 756 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TMEM145Q8NBT3 493 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 STAG3L4Q8TBR4 150 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SLC26A7Q8TE54 656 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 RHOJQ9H4E5 214 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CACYBPQ9HB71 228 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 DCDC2Q9UHG0 476 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TIMM22Q9Y584 194 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 RLFQ13129 1914 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 DRGXA6NNA5 263 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 IRF9Q00978 393 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TBC1D25Q3MII6 688 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 WDR45BQ5MNZ6 344 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SPATA24Q86W54 205 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ULK2Q8IYT8 1036 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 MIER2Q8N344 545 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 PGBD5Q8N414 524 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 APOPT1Q96IL0 206 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 FAR2Q96K12 515 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 CEP295NLQ96MC4 621 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms