RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TNFAIP8O95379 198 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 RB1P06400 928 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 ALPPL2P10696 532 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 RPL4P36578 427 aaKnown RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 SMIM11AP58511 58 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CDC42P60953 191 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 RING1Q06587 406 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 AMZ1Q400G9 498 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PIM3Q86V86 326 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 SLC9A6Q92581 669 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 MTERF1Q99551 399 aaKnown RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CCM2Q9BSQ5 444 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 MAP4K5Q9Y4K4 846 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PCDHGA11Q9Y5H2 935 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 DLDP09622 509 aaKnown RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF30P17039 623 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF33AQ06730 810 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 SLC30A9Q6PML9 568 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 MACC1Q6ZN28 852 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PRR23BQ6ZRT6 265 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 LPCAT2Q7L5N7 544 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 RORBQ92753 470 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CFAP20Q9Y6A4 193 aaKnown RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 COL18A1P39060 1754 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 DYTNA2CJ06 578 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 FAM159BA6NKW6 160 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 B4DGG1 531 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 TGM5O43548 720 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PTPRCAPQ14761 206 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PRKD1Q15139 912 aaPredicted RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PDE12Q6L8Q7 609 aaKnown RBP14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PAOXQ6QHF9 649 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CYP2U1Q7Z449 544 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 LRRTM4Q86VH4 590 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 AGAP11Q8TF27 550 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 MAGEL2Q9UJ55 1249 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 PCDHGA4Q9Y5G9 962 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 K7EPI3 171 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 AHSGP02765 367 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 ITPKBP27987 946 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 LMAN2Q12907 356 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 ALG11Q2TAA5 492 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 RALGPS1Q5JS13 557 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 MARCH8Q5T0T0 291 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CLDN19Q8N6F1 224 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 OTUB2Q96DC9 234 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CDK15Q96Q40 435 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 KAT6AQ92794 2004 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 SLX4Q8IY92 1834 aa14.68□□□□□ -0.06
COL17A1-201ENST00000353479 CHRNGP07510 517 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ANPEPP15144 967 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 STK19P49842 368 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 STXBP1P61764 594 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 FOXM1Q08050 763 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ARMCX6Q7L4S7 300 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ANKRD46Q86W74 232 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 TTC29Q8NA56 475 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 NMD3Q96D46 503 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 LMAN2LQ9H0V9 348 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 TMLHEQ9NVH6 421 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 CLDN4O14493 209 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF8P17098 575 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 IDH3AP50213 366 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 CLCNKAP51800 687 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 VANGL1Q8TAA9 524 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 METTL21AQ8WXB1 218 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 FEM1AQ9BSK4 669 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 PNLIPRP1P54315 467 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 GPX6P59796 221 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ANO7Q6IWH7 933 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 B4GALT6Q9UBX8 382 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 CNOT6Q9ULM6 557 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 LINC00854A0A1B0GVQ3 168 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 H3BNH8 94 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 SCN2BO60939 215 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ECI2O75521 394 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 EFNA1P20827 205 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 GSTM5P46439 218 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF155Q12901 538 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 EPS8Q12929 822 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 HSPB3Q12988 150 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 MRPL28Q13084 256 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 DGKKQ5KSL6 1271 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 METTL21CQ5VZV1 264 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 DEFB119Q8N690 84 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ZIC5Q96T25 663 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 ADI1Q9BV57 179 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 OSBPL10Q9BXB5 764 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 R3HDMLQ9H3Y0 253 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 GMPPBQ9Y5P6 360 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 TEX264Q9Y6I9 313 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 SAP18O00422 153 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 STC2O76061 302 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 SIX3O95343 332 aaPredicted RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 TAS2R41P59536 307 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 LRRC32Q14392 662 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 RBM20Q5T481 1227 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 PIK3R6Q5UE93 754 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms