RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SIGLEC10Q96LC7 697 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 C12orf66Q96MD2 445 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 INSM2Q96T92 566 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 CMKLR1Q99788 373 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 NUDT22Q9BRQ3 303 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 NAT9Q9BTE0 207 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 CARD6Q9BX69 1037 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 TBC1D10AQ9BXI6 508 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 SEMA6CQ9H3T2 930 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 COG4Q9H9E3 785 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 IMP3Q9NV31 184 aaKnown RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 SATB2Q9UPW6 733 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 PCDHGA8Q9Y5G5 932 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 PRSS21Q9Y6M0 314 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 RPS6KL1Q9Y6S9 549 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 COL27A1Q8IZC6 1860 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 IGHV5-10-1A0A0J9YXX1 117 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 FAM187AA6NFU0 413 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 EFCAB8A8MWE9 144 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 USP1O94782 785 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 UBXN7O94888 489 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 MTHFD1P11586 935 aaKnown RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 HOXB3P14651 431 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 MAPK9P45984 424 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 ARCN1P48444 511 aaKnown RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 PDX1P52945 283 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 CKAP4Q07065 602 aaKnown RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 THOC5Q13769 683 aaKnown RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 GPR18Q14330 331 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 SEMA3AQ14563 771 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 C3orf38Q5JPI3 329 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 RNF187Q5TA31 235 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 PTRHD1Q6GMV3 140 aaKnown RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 NEPROQ6NW34 567 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 KLHL35Q6PF15 583 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 FOXR1Q6PIV2 292 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF574Q6ZN55 896 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 TMPRSS9Q7Z410 1059 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 LDB1Q86U70 411 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 SLITRK4Q8IW52 837 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 PDIK1LQ8N165 341 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 LILRA3Q8N6C8 439 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 BBOF1Q8ND07 529 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 GABPB2Q8TAK5 448 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF669Q96BR6 464 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 STAMBPL1Q96FJ0 436 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 FCRL3Q96P31 734 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 TRIM51Q9BSJ1 452 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 MARCH4Q9P2E8 410 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-201ENST00000332345 VPS9D1Q9Y2B5 631 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 FRYQ5TBA9 3013 aa13.7□□□□□ -0.22
LIMS1-201ENST00000332345 GOLGA8KD6RF30 607 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 GOLGA8TH3BQL2 631 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 KIF2AO00139 706 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 PLD2O14939 933 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 HGSO14964 777 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 KPNA5O15131 536 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 BRINP1O60477 761 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 DXOO77932 396 aaKnown RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 URI1O94763 535 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 SEC31AO94979 1220 aaKnown RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 TTC4O95801 387 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 JMJD7P0C870 316 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 TYRP1P17643 537 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ARNTP27540 789 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 MLLT3P42568 568 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 CFHR1Q03591 330 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ST3GAL2Q16842 350 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 LONRF1Q17RB8 773 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF658BQ4V348 819 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 SYTL3Q4VX76 610 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 HIBCHQ6NVY1 386 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 IGF2-ASQ6U949 168 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 LMNTD2Q8IXW0 634 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 CALML6Q8TD86 181 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ASZ1Q8WWH4 475 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF592Q92610 1267 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 FGF11Q92914 225 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ZNF578Q96N58 590 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 SLC46A1Q96NT5 459 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 PANX3Q96QZ0 392 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 FERD3LQ96RJ6 166 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 EBNA1BP2Q99848 306 aaKnown RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ERP44Q9BS26 406 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 TRIM31Q9BZY9 425 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 OR52A5Q9H2C5 316 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 PDP2Q9P2J9 529 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 GNPTGQ9UJJ9 305 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 CDC23Q9UJX2 597 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 CFAP20Q9Y6A4 193 aaKnown RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 FAM169AQ9Y6X4 670 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 ACACAQ13085 2346 aa13.69□□□□□ -0.22
LIMS1-201ENST00000332345 URB1O60287 2271 aaKnown RBP13.69□□□□□ -0.22
LIMS1-201ENST00000332345 PRAMEF33A0A0G2JMD5 474 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 ZCWPW2A0A1B0GU75 182 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 UBA6A0AVT1 1052 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-201ENST00000332345 H3BMM5 538 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 APOA4P06727 396 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 PGAM1P18669 254 aa13.68□□□□□ -0.22
LIMS1-201ENST00000332345 OGNP20774 298 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms