RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 STK32CQ86UX6 486 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 NPAS4Q8IUM7 802 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 TSPEARQ8WU66 669 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 CGREF1Q99674 301 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 ELOVL2Q9NXB9 296 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 NUDT4Q9NZJ9 180 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 CHD5Q8TDI0 1954 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 VARSP26640 1264 aaKnown RBP17.14■□□□□ 0.33
COL9A1-201ENST00000320755 SMARCB1Q12824 385 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 CYBRD1Q53TN4 286 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 SPRED1Q7Z699 444 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 ZBTB46Q86UZ6 589 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 PTRH1Q86Y79 214 aaKnown RBP17.14■□□□□ 0.33
COL9A1-201ENST00000320755 ITFG1Q8TB96 612 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 PLD4Q96BZ4 506 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 TNKS2Q9H2K2 1166 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 WWOXQ9NZC7 414 aa17.14■□□□□ 0.33
COL9A1-201ENST00000320755 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.14■□□□□ 0.33
COL9A1-201ENST00000320755 TYW5A2RUC4 315 aaKnown RBP17.13■□□□□ 0.33
COL9A1-201ENST00000320755 LSM1O15116 133 aaKnown RBP17.13■□□□□ 0.33
COL9A1-201ENST00000320755 GSTA4O15217 222 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 RAD51BO15315 384 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 ENO2P09104 434 aaPredicted RBP17.13■□□□□ 0.33
COL9A1-201ENST00000320755 STT3AP46977 705 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 GRIK2Q13002 908 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 MTA1Q13330 715 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 SPOUT1Q5T280 376 aaKnown RBP17.13■□□□□ 0.33
COL9A1-201ENST00000320755 FAM117BQ6P1L5 589 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 ADAMTSL2Q86TH1 951 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 CLEC4FQ8N1N0 589 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 FAM86B1Q8N7N1 296 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 OR10A6Q8NH74 314 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 P2RY12Q9H244 342 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 POLR1BQ9H9Y6 1135 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 VAPAQ9P0L0 249 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 FRMPD3Q5JV73 1810 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 KANSL1LA0AUZ9 987 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 ZNF7P17097 686 aaPredicted RBP17.13■□□□□ 0.33
COL9A1-201ENST00000320755 HMGCLP35914 325 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 CAPGP40121 348 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 CLCN2P51788 898 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 FAM174BQ3ZCQ3 159 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 GPR107Q5VW38 600 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 ABRAXAS1Q6UWZ7 409 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 APCDD1Q8J025 514 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 KRTCAP2Q8N6L1 136 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 PDZD8Q8NEN9 1154 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 BDH2Q9BUT1 245 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 ZFYVE1Q9HBF4 777 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 TLR9Q9NR96 1032 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 COMMD8Q9NX08 183 aa17.13■□□□□ 0.33
COL9A1-201ENST00000320755 GMNNO75496 209 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 GALK1P51570 392 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TUBA4AP68366 448 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 LAPTM5Q13571 262 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ARHGEF7Q14155 803 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CHST9Q7L1S5 443 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ARL14EPQ8N8R7 260 aaPredicted RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CD99L2Q8TCZ2 262 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 SKA2Q8WVK7 121 aaPredicted RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 AUTS2Q8WXX7 1259 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 DTNBP1Q96EV8 351 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 MYO19Q96H55 970 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CLSTN3Q9BQT9 956 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 LTB4R2Q9NPC1 389 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 PIKFYVEQ9Y2I7 2098 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ARVCFO00192 962 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TAPBPO15533 448 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 AOC2O75106 756 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 SEC22BO75396 215 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 BMP10O95393 424 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 OTCP00480 354 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 HTR1EP28566 365 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 RANBP1P43487 201 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CTBSQ01459 385 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 PMS2P3Q13401 168 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TXNDC8Q6A555 127 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 STK40Q8N2I9 435 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TNIP2Q8NFZ5 429 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 C2orf15Q8WU43 125 aaKnown RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 PREBQ9HCU5 417 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CRLS1Q9UJA2 301 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TNPO3Q9Y5L0 923 aaKnown RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 PRRG1O14668 218 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ALBP02768 609 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ELK4P28324 431 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 IMPG1Q17R60 797 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 KCTD21Q4G0X4 260 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 SLC44A4Q53GD3 710 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 IRAK1BP1Q5VVH5 260 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TPGS1Q6ZTW0 290 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ERI1Q8IV48 349 aaKnown RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ADGRG2Q8IZP9 1017 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 OR10Q1Q8NGQ4 319 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 TMBIM1Q969X1 311 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 ULK4Q96C45 1275 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 MUS81Q96NY9 551 aa17.12■□□□□ 0.33
COL9A1-201ENST00000320755 KLF16Q9BXK1 252 aaPredicted RBP17.12■□□□□ 0.33
COL9A1-201ENST00000320755 CXorf21Q9HAI6 301 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms