RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TESMINQ9Y4I5 508 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 DAPL1A0PJW8 107 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 C5orf60A6NFR6 353 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MT-ND1P03886 318 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 DCKP27707 260 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SLC7A1P30825 629 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 IFI44LQ53G44 452 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ARL13AQ5H913 290 aaPredicted RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SLC25A25Q6KCM7 469 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF627Q7L945 461 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SPON1Q9HCB6 807 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 POMPQ9Y244 141 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MAB21L2Q9Y586 359 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 FXYD6-FXYD2A0A087WZ82 144 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 A0A0U1RQJ8 604 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 EML1O00423 815 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ITGA10O75578 1167 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PIRTP0C851 137 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 IDH3AP50213 366 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 BRMS1LQ5PSV4 323 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 WSCD1Q658N2 575 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SLC9A9Q8IVB4 645 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PNLDC1Q8NA58 520 aaKnown RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 OR10A6Q8NH74 314 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PHB2Q99623 299 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 FXYD6Q9H0Q3 95 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 LGALS13Q9UHV8 139 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PPM1BO75688 479 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MATN4O95460 622 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 EPCAMP16422 314 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ACVR2AP27037 513 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 LCN1P31025 176 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MERTKQ12866 999 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SMARCD3Q6STE5 483 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ANKFN1Q8N957 763 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 P2RY11Q96G91 374 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 LPIN3Q9BQK8 851 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ANKRD63C9JTQ0 380 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 hCG_2039718K7EN88 272 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PSMD9O00233 223 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 CYP11A1P05108 521 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 C8BP07358 591 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PNLIPRP1P54315 467 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 RPP38P78345 283 aaKnown RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PRKCDQ05655 676 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 TLR1Q15399 786 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 AADACL4Q5VUY2 407 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PWWP2AQ96N64 755 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 HIPK3Q9H422 1215 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MRPL17Q9NRX2 175 aaKnown RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 TMLHEQ9NVH6 421 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SH3D21A4FU49 640 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 RP2O75695 350 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 WNT3AP56704 352 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 MAXP61244 160 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF155Q12901 538 aaPredicted RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 CADM2Q8N3J6 435 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SMG7Q92540 1137 aaKnown RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 CADM1Q9BY67 442 aaKnown RBP13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ASTN1O14525 1302 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 DNM1LO00429 736 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF823P16415 610 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 GTF2BQ00403 316 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SLC25A52Q3SY17 297 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SH3RF1Q7Z6J0 888 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SLC37A3Q8NCC5 494 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 BPIFB1Q8TDL5 484 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 SHC3Q92529 594 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 RIT1Q92963 219 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 PFDN5Q99471 154 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 NEUROD4Q9HD90 331 aa13.7□□□□□ -0.22
CSPG4-201ENST00000308508 TTC34A8MYJ7 566 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PDPK1O15530 556 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 NOBOXO60393 691 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF3P17036 446 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PTF1AQ7RTS3 328 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZBTB2Q8N680 514 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 B3GNT4Q9C0J1 378 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 DCSTAMPQ9H295 470 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ANXA4P09525 319 aaPredicted RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CTPS1P17812 591 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ITPKAP23677 461 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CSTF2P33240 577 aaKnown RBP eCLIP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 GRK1Q15835 563 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 PIWIL1Q96J94 861 aaKnown RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 HIST1H2AAQ96QV6 131 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 LYARQ9NX58 379 aaKnown RBP13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF510Q9Y2H8 683 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 USP32Q8NFA0 1604 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 RCCD1A6NED2 376 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 IL1BP01584 269 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 MAN2A2P49641 1150 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 NOMO3P69849 1222 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 SULT2A1Q06520 285 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CLEC6AQ6EIG7 209 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CPNE9Q8IYJ1 553 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 OR5J2Q8NH18 312 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 C1orf216Q8TAB5 229 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 CYP2W1Q8TAV3 490 aa13.69□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF700Q9H0M5 742 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms