RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FAM136AQ96C01 138 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 CMTM7Q96FZ5 175 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 OXSMQ9NWU1 459 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 DMTF1Q9Y222 760 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 B3GALT2O43825 422 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 BEST1O76090 585 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 SF1Q15637 639 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 MMAAQ8IVH4 418 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 SVOPQ8N4V2 548 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 EFCAB3Q8N7B9 438 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 ITFG1Q8TB96 612 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 SIGLEC10Q96LC7 697 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 C1orf109Q9NX04 203 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 C6orf203Q9P0P8 240 aaPredicted RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 CDV3Q9UKY7 258 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 KIF13BQ9NQT8 1826 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 SAC3D1A6NKF1 404 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 KLF8O95600 359 aaPredicted RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 EBLN1P0CF75 366 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 MRPL58Q14197 206 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 DPPA4Q7L190 304 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 PIK3C3Q8NEB9 887 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 TRPV3Q8NET8 790 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 KLHDC7BQ96G42 594 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 PELOQ9BRX2 385 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 IER2Q9BTL4 223 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 SNAP91O60641 907 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 VAV1P15498 845 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 ZC3H14Q6PJT7 736 aaKnown RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 DSELQ8IZU8 1212 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 OR2M4Q96R27 311 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 ABCG4Q9H172 646 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 OR2AG1Q9H205 316 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 POLR1BQ9H9Y6 1135 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 ZNF282Q9UDV7 671 aaPredicted RBP13.45□□□□□ -0.26
LDLR-201ENST00000252444 KLHL20Q9Y2M5 609 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 BANF1O75531 89 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 CHRNA6Q15825 494 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 TBCELQ5QJ74 424 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 FKBP10Q96AY3 582 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 IL1RL2Q9HB29 575 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 ARL5AQ9Y689 179 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 GREB1LQ9C091 1923 aaPredicted RBP13.44□□□□□ -0.26
LDLR-201ENST00000252444 KRT87PA6NCN2 255 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 TMX2-CTNND1H3BSU7 103 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 CNTN5O94779 1100 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 RIPOR1Q6ZS17 1223 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 BHLHE22Q8NFJ8 381 aaPredicted RBP13.44□□□□□ -0.26
LDLR-201ENST00000252444 OR10G6Q8NH81 332 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 IGSF8Q969P0 613 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 ZIM2Q9NZV7 527 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 DHRS7Q9Y394 339 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 FFAR2O15552 330 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 CNOT3O75175 753 aaKnown RBP13.44□□□□□ -0.26
LDLR-201ENST00000252444 ACRV1P26436 265 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 PSME3P61289 254 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 CCNYL2Q5T2Q4 361 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 LRRTM3Q86VH5 581 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 METTL21AQ8WXB1 218 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 TMLHEQ9NVH6 421 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 RNGTTO60942 597 aaKnown RBP13.44□□□□□ -0.26
LDLR-201ENST00000252444 CDH3P22223 829 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 HMGCLP35914 325 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 KIR3DL1P43629 444 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 NAE1Q13564 534 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 MANEALQ5VSG8 457 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 LAYNQ6UX15 382 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 NUDT13Q86X67 352 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 C12orf66Q96MD2 445 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 EBF3Q9H4W6 596 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 NEK6Q9HC98 313 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 SNX8Q9Y5X2 465 aa13.44□□□□□ -0.26
LDLR-201ENST00000252444 ITGB1P05556 798 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TAS2R39P59534 338 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 PRR5P85299 388 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 PRAMEF14Q5SWL7 426 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 PRAMEF13Q5VWM6 474 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ZNF621Q6ZSS3 439 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TMPRSS11BQ86T26 416 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TMEM135Q86UB9 458 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 CPSF7Q8N684 471 aaKnown RBP13.43□□□□□ -0.26
LDLR-201ENST00000252444 RPL10LQ96L21 214 aaKnown RBP13.43□□□□□ -0.26
LDLR-201ENST00000252444 TRIM4Q9C037 500 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 B4GALT6Q9UBX8 382 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 IRAK3Q9Y616 596 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 DCXO43602 365 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ECI2O75521 394 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 SYPP08247 313 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ENDOUP21128 410 aaKnown RBP13.43□□□□□ -0.26
LDLR-201ENST00000252444 VAC14Q08AM6 782 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 LRP8Q14114 963 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 DUSP6Q16828 381 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ALFQ53S48 1182 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TMEM240Q5SV17 173 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 CMC1Q7Z7K0 106 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TMC8Q8IU68 726 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 SYNPOQ8N3V7 929 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 GLYATL1Q969I3 302 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 NT5C3BQ969T7 300 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 MRGPRX2Q96LB1 330 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms