RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 STX4Q12846 297 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CLEC16AQ2KHT3 1053 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SLC9C1Q4G0N8 1177 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OVOS1Q6IE37 1185 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 UGT3A1Q6NUS8 523 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HSDL2Q6YN16 418 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FAM13CQ8NE31 585 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MCOLN3Q8TDD5 553 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 STK35Q8TDR2 534 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HCAR2Q8TDS4 363 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ELMO3Q96BJ8 720 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZBTB18Q99592 522 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAP3K3Q99759 626 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGAP39Q9C0H5 1083 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LIN7BQ9HAP6 207 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RAB6BQ9NRW1 208 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TAS2R3Q9NYW6 316 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 VAPAQ9P0L0 249 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CHRNA9Q9UGM1 479 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GDAQ9Y2T3 454 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 AP4S1Q9Y587 144 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYP3A7-CYP3A51PA0A087WV96 503 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 F8VP50 259 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYR61O00622 381 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TBX1O43435 398 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SEC22BO75396 215 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GATBO75879 557 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYP3A4P08684 503 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 THRAP10827 490 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RHCEP18577 417 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYP3A7P24462 503 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GRIA3P42263 894 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RHDQ02161 417 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MPP2Q14168 576 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.54□□□□□ -1.843e-6■■■□□ 18.5
SCN1A-221ENST00000641996 RPL13AP3Q6NVV1 102 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF836Q6ZNA1 936 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TREML1Q86YW5 311 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TCEAL8Q8IYN2 117 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 C16orf78Q8WTQ4 265 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FBXO17Q96EF6 278 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 INTS14Q96SY0 518 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAN2C1Q9NTJ4 1040 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MGAT4AQ9UM21 535 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RIPK3Q9Y572 518 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MYO5AQ9Y4I1 1855 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PPP1R2P9O14990 202 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA31D3P0C874 917 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EPHX2P34913 555 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ECI1P42126 302 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PTH1RQ03431 593 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TFDP3Q5H9I0 405 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CYP4A22Q5TCH4 519 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SCIMPQ6UWF3 145 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 DPY19L3Q6ZPD9 716 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA31D4Q6ZUB0 917 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 GMCL1P1Q8NEA9 526 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 OR9K2Q8NGE7 335 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PLEKHO2Q8TD55 490 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 OTUD7AQ8TE49 926 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EDEM1Q92611 657 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TADA1Q96BN2 335 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CTRCQ99895 268 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RPF1Q9H9Y2 349 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MS4A12Q9NXJ0 267 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 J3QW42 95 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SOX1O00570 391 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 GABRDO14764 452 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 POLR1CO15160 346 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SCN2BO60939 215 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IFNA10P01566 189 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IFNA4P05014 189 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PRKCHP24723 683 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ELK4P28324 431 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MARCKSP29966 332 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HNRNPH3P31942 346 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RPL19P84098 196 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLC14A1Q13336 389 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TRAM2Q15035 370 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TRAM1Q15629 374 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 GPAT2Q6NUI2 795 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TLDC1Q6P9B6 456 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IZUMO2Q6UXV1 221 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EID3Q8N140 333 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLC6A16Q9GZN6 736 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RRP7BPQ9NSQ0 103 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ABCD2Q9UBJ2 740 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MFHAS1Q9Y4C4 1052 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHA1Q9Y5I3 950 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 A0A1B0GV72 72 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SMIM31A0A1B0GVY4 71 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NFIBO00712 420 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SERPINB7O75635 380 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IFNA6P05013 189 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CDK1P06493 297 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CD19P15391 556 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HOXD13P35453 343 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MSX2P35548 267 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IGFALSP35858 605 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CRKP46108 304 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms