RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 KCTD5Q9NXV2 234 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 NCKIPSDQ9NZQ3 722 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 CYP8B1Q9UNU6 501 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 CDYLQ9Y232 598 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 MRPS17Q9Y2R5 130 aaKnown RBP19.77■□□□□ 0.76
CLN3-250ENST00000636839 ANKRD12Q6UB98 2062 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 ERICH4A6NGS2 130 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 SUPT3HB4E1H0 165 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 MAGEC1O60732 1142 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 KERAO60938 352 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 SUPT3HO75486 399 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 IPO13O94829 963 aaKnown RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 AP2A2O94973 939 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 DGKAP23743 735 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PREPP48147 710 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PRKAA2P54646 552 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 ABCE1P61221 599 aaKnown RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 LRRC32Q14392 662 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 AGERQ15109 404 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 SBSNQ6UWP8 590 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 FAM160A2Q8N612 972 aaPredicted RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 RFWD2Q8NHY2 731 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 FOXJ1Q92949 421 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PDLIM5Q96HC4 596 aaKnown RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 TPSD1Q9BZJ3 242 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PREBQ9HCU5 417 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 THAP1Q9NVV9 213 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 DNAH14Q0VDD8 3507 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 TSPAN8P19075 237 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 IGFALSP35858 605 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PRLHRP49683 370 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 CLDN2P57739 230 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PHKG1Q16816 387 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 C18orf21Q32NC0 220 aaPredicted RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 PLA2G4EQ3MJ16 856 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 TRAPPC5Q8IUR0 188 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 SYNPOQ8N3V7 929 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PTGR2Q8N8N7 351 aaPredicted RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 RAB3IL1Q8TBN0 382 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 AGR3Q8TD06 166 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 ESAMQ96AP7 390 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 SHDQ96IW2 340 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 NECAB3Q96P71 396 aaPredicted RBP19.76■□□□□ 0.75
CLN3-250ENST00000636839 BTBD1Q9H0C5 482 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 EBF2Q9HAK2 575 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 PNPOQ9NVS9 261 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 MID2Q9UJV3 735 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 DCTN4Q9UJW0 460 aa19.76■□□□□ 0.75
CLN3-250ENST00000636839 KRT87PA6NCN2 255 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 FUCA1P04066 466 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 AGTR2P50052 363 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 GKAP1Q5VSY0 366 aaPredicted RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 SPATA21Q7Z572 469 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 LSMEM2Q8N112 164 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 TEX101Q9BY14 249 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 NSRP1Q9H0G5 558 aaKnown RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 TM7SF3Q9NS93 570 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 USP36Q9P275 1121 aaKnown RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 ASB1Q9Y576 335 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 H0Y8X5 98 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 GRK2P25098 689 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 TRIM23P36406 574 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 RGS4P49798 205 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 GBX1Q14549 363 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 ARL13AQ5H913 290 aaPredicted RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 XKR5Q6UX68 686 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 GPSM1Q86YR5 675 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 MYO1HQ8N1T3 1032 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 TSTD1Q8NFU3 115 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 SKA2Q8WVK7 121 aaPredicted RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 C7orf26Q96N11 449 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 CCM2Q9BSQ5 444 aa19.75■□□□□ 0.75
CLN3-250ENST00000636839 C6orf106Q9H6K1 298 aaPredicted RBP19.75■□□□□ 0.75
CLN3-250ENST00000636839 A0A0C4DFX4 3053 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 POM121BA6NF01 834 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 ATG13O75143 517 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 FTH1P02794 183 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 DCNP07585 359 aaKnown RBP19.74■□□□□ 0.75
CLN3-250ENST00000636839 TPBGLP0DKB5 382 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 GFAPP14136 432 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 PDHA2P29803 388 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 TTLL9Q3SXZ7 439 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 WDR26Q9H7D7 661 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 DNAJC16Q9Y2G8 782 aa19.74■□□□□ 0.75
CLN3-250ENST00000636839 PPP6CO00743 305 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 SMIM24O75264 130 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 GPC4O75487 556 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 GUCA1CO95843 209 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 CDH13P55290 713 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 DNAJB13P59910 316 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 TGFBIQ15582 683 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 PPP1R3AQ16821 1122 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 MAP7D1Q3KQU3 841 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 ZNF658BQ4V348 819 aaPredicted RBP19.73■□□□□ 0.75
CLN3-250ENST00000636839 MBOAT1Q6ZNC8 495 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 ZNF781Q8N8C0 355 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 OR2T34Q8NGX1 318 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 TOE1Q96GM8 510 aaKnown RBP19.73■□□□□ 0.75
CLN3-250ENST00000636839 NSUN5Q96P11 429 aaKnown RBP19.73■□□□□ 0.75
CLN3-250ENST00000636839 SLC23A2Q9UGH3 650 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms