RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KCNJ13O60928 360 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 PKMP14618 531 aaKnown RBP19.37■□□□□ 0.69
UPF3A-211ENST00000618700 FMO4P31512 558 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 CD151P48509 253 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 STRA8Q7Z7C7 330 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 AMZ2Q86W34 360 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 GKN2Q86XP6 184 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 HM13Q8TCT9 377 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 CCM2Q9BSQ5 444 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 AARSD1Q9BTE6 412 aaKnown RBP19.37■□□□□ 0.69
UPF3A-211ENST00000618700 KLC4Q9NSK0 619 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 CORO1CQ9ULV4 474 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-211ENST00000618700 MED16Q9Y2X0 877 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 ZFC3H1O60293 1989 aaKnown RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 A0A087WUV0 522 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 C17orf113A0A1B0GUU1 675 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 IQCF5A8MTL0 148 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 TPP1O14773 563 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 YY2O15391 372 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 VCLP18206 1134 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 PBLDP30039 288 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 ACTR1BP42025 376 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 ABCG1P45844 678 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 ACTR1AP61163 376 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 ARHGAP8P85298 464 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 UAP1Q16222 522 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 LVRNQ6Q4G3 990 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 FAM83HQ6ZRV2 1179 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 TAF8Q7Z7C8 310 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 ZC3HC1Q86WB0 502 aaKnown RBP19.36■□□□□ 0.69
UPF3A-211ENST00000618700 CYTH2Q99418 400 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 CPNE1Q99829 537 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 NLGN3Q9NZ94 848 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 TAAR2Q9P1P5 351 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 COMMD10Q9Y6G5 202 aa19.36■□□□□ 0.69
UPF3A-211ENST00000618700 A6NCN8 305 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 NEMP2A6NFY4 417 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 C4orf47A7E2U8 309 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 NIPSNAP2O75323 286 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 ANXA6P08133 673 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 CD59P13987 128 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 GP5P40197 560 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 LIMK1P53667 647 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 CSE1LP55060 971 aaKnown RBP19.35■□□□□ 0.69
UPF3A-211ENST00000618700 NFE2L1Q14494 772 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 DEFB133Q30KQ1 61 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 STPG1Q5TH74 334 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 SLC30A9Q6PML9 568 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 CTAGE3PQ8IX95 158 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 KIAA2013Q8IYS2 634 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 KRT222Q8N1A0 295 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 PPM1NQ8N819 430 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 MYRIPQ8NFW9 859 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 OR4C6Q8NH72 309 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 KCNJ9Q92806 393 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 PANX3Q96QZ0 392 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 TSSK1BQ9BXA7 367 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 RHOJQ9H4E5 214 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 TBC1D29Q9UFV1 150 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 DNAJC16Q9Y2G8 782 aa19.35■□□□□ 0.69
UPF3A-211ENST00000618700 ASCC3Q8N3C0 2202 aaKnown RBP19.35■□□□□ 0.69
UPF3A-211ENST00000618700 ARID1BQ8NFD5 2236 aaPredicted RBP19.35■□□□□ 0.69
UPF3A-211ENST00000618700 FFAR2O15552 330 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 FLRT2O43155 660 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 CCR7P32248 378 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 ILF2Q12905 390 aaKnown RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 SLC29A2Q14542 456 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 SUZ12Q15022 739 aaKnown RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 KLHL38Q2WGJ6 581 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 C6orf132Q5T0Z8 1188 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 RBM20Q5T481 1227 aaKnown RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 METRNLQ641Q3 311 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 LILRA3Q8N6C8 439 aaPredicted RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 UHMK1Q8TAS1 419 aaKnown RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 NDNQ99608 321 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 CCDC68Q9H2F9 335 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 OSGEPL1Q9H4B0 414 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 COG4Q9H9E3 785 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 SPATS2LQ9NUQ6 558 aaKnown RBP19.34■□□□□ 0.69
UPF3A-211ENST00000618700 PCOLCE2Q9UKZ9 415 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 BTBD3Q9Y2F9 522 aa19.34■□□□□ 0.69
UPF3A-211ENST00000618700 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.33■□□□□ 0.68
UPF3A-211ENST00000618700 SLC5A10A0PJK1 596 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 TRIM38O00635 465 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 LIN7AO14910 233 aaPredicted RBP19.33■□□□□ 0.68
UPF3A-211ENST00000618700 TRIM16O95361 564 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 EML2O95834 649 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 ITGB6P18564 788 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 AOAHP28039 575 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 GRK6P43250 576 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 LIMK2P53671 638 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 TIAL1Q01085 375 aaKnown RBP eCLIP19.33■□□□□ 0.68
UPF3A-211ENST00000618700 INAVAQ3KP66 663 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 AGAP9Q5VTM2 703 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 WASH2PQ6VEQ5 465 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 MREGQ8N565 214 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 SLC44A1Q8WWI5 657 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 ELMO1Q92556 727 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 VPS39Q96JC1 886 aa19.33■□□□□ 0.68
UPF3A-211ENST00000618700 RBBP8Q99708 897 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms