RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ZNF398Q8TD17 642 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 BLOC1S5Q8TDH9 187 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 THAP4Q8WY91 577 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 ULK4Q96C45 1275 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 HAUS1Q96CS2 278 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 OXNAD1Q96HP4 312 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 CCM2Q9BSQ5 444 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 TRIM4Q9C037 500 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 EPN3Q9H201 632 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 GBA3Q9H227 469 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 LATS2Q9NRM7 1088 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 SAE1Q9UBE0 346 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-211ENST00000597968 RSPH14Q9UHP6 348 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 LNPEPQ9UIQ6 1025 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 HEBP2Q9Y5Z4 205 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 COLEC10Q9Y6Z7 277 aa13.32□□□□□ -0.28
TRIM28-211ENST00000597968 OR5K3A6NET4 321 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 GAPDHSO14556 408 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-211ENST00000597968 STK10O94804 968 aaKnown RBP13.31□□□□□ -0.28
TRIM28-211ENST00000597968 PRAMEF1O95521 474 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 ZBTB11O95625 1053 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-211ENST00000597968 CRTAMO95727 393 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 GSTM1P09488 218 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 MTHFD1P11586 935 aaKnown RBP13.31□□□□□ -0.28
TRIM28-211ENST00000597968 ZNF28P17035 718 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 PTPN7P35236 360 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 HADHAP40939 763 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TUBB4BP68371 445 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 GSTM4Q03013 218 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TUBB3Q13509 450 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TUBB2AQ13885 445 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 PRPSAP1Q14558 356 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 PLCL1Q15111 1095 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 NOMO1Q15155 1222 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 LLGL1Q15334 1064 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 SPA17Q15506 151 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TMTC4Q5T4D3 741 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 KAZNQ674X7 775 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 C16orf46Q6P387 395 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 FAM151BQ6UXP7 276 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 FAM92BQ6ZTR7 304 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 PTRH1Q86Y79 214 aaKnown RBP13.31□□□□□ -0.28
TRIM28-211ENST00000597968 D2HGDHQ8N465 521 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 SLC25A41Q8N5S1 370 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 GALNT6Q8NCL4 622 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 IPMKQ8NFU5 416 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 LRFN5Q96NI6 719 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TUBB2BQ9BVA1 445 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 KIR3DX1Q9H7L2 352 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 TFR2Q9UP52 801 aa13.31□□□□□ -0.28
TRIM28-211ENST00000597968 IGHV5-51A0A0C4DH38 117 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UBA6A0AVT1 1052 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CFAP99D6REC4 459 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 KIF1CO43896 1103 aaKnown RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A9O60656 530 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CPNE3O75131 537 aaKnown RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 RFPL1O75677 317 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 SRP72O76094 671 aaKnown RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A6P19224 532 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A1P22309 533 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A4P22310 534 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 F8A1P23610 371 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CYLC1P35663 651 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CETN2P41208 172 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 ARL4DP49703 201 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CTSCP53634 463 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 PMS2P54278 862 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 DNASE1L3Q13609 305 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 GPR33Q49SQ1 333 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 DNTTIP2Q5QJE6 756 aaKnown RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 SARM1Q6SZW1 724 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 ZNF517Q6ZMY9 492 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-211ENST00000597968 SYVN1Q86TM6 617 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 CCDC50Q8IVM0 306 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 VPS37BQ9H9H4 285 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A7Q9HAW7 530 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A10Q9HAW8 530 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 UGT1A8Q9HAW9 530 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 FGF21Q9NSA1 209 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 HRASLS2Q9NWW9 162 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 BTRCQ9Y297 605 aa13.3□□□□□ -0.28
TRIM28-211ENST00000597968 COL12A1Q99715 3063 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CCDC66A2RUB6 948 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 OR2AG2A6NM03 316 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PYCARD-AS1I3L0S3 204 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 SLC35G4P0C7Q5 338 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 AKT1P31749 480 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CTNNA1P35221 906 aaKnown RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ADRA1AP35348 466 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CHRNA4P43681 627 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CD151P48509 253 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 CD97P48960 835 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PRLHRP49683 370 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 GSDMDP57764 484 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 RPS15P62841 145 aaKnown RBP13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ADCY2Q08462 1091 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 PRKAA1Q13131 559 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 ERV3-1Q14264 604 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 NFE2L1Q14494 772 aa13.29□□□□□ -0.28
TRIM28-211ENST00000597968 SKIDA1Q1XH10 827 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms