RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TFR2	Q9UP52	801 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	POLH	Q9Y253	713 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	PKP3	Q9Y446	797 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	ALG6	Q9Y672	507 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	ARL5A	Q9Y689	179 aa		10.3	□□□□□ -0.76
LSM4-205	ENST00000597776	NBAS	A2RRP1	2371 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	MKRN2OS	H3BPM6	223 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	MTSS1	O43312	755 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	KCNJ13	O60928	360 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	DNAJB5	O75953	348 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PRAMEF1	O95521	474 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PDGFA	P04085	211 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	CCNYL3	P0C7X3	344 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	MTHFD1	P11586	935 aa	Known RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	HLA-DPA1	P20036	260 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PMS2	P54278	862 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	MPP3	Q13368	585 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	XRCC4	Q13426	336 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	OLIG2	Q13516	323 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	UBAP2L	Q14157	1087 aa	Known RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	TFDP3	Q5H9I0	405 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	ZDHHC20	Q5W0Z9	365 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	METRNL	Q641Q3	311 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	FAM199X	Q6PEV8	388 aa	Predicted RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	FBXO38	Q6PIJ6	1188 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	CCDC50	Q8IVM0	306 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	RNF214	Q8ND24	703 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	DTX3L	Q8TDB6	740 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	KRT35	Q92764	455 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	ZNF514	Q96K75	400 aa	Predicted RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PPM1M	Q96MI6	270 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	INSM2	Q96T92	566 aa	Predicted RBP	10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	APOL2	Q9BQE5	337 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	GORASP1	Q9BQQ3	440 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	ANP32E	Q9BTT0	268 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	FICD	Q9BVA6	458 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	HEMGN	Q9BXL5	484 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	FSD1L	Q9BXM9	530 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	TRIM55	Q9BYV6	548 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PDE7B	Q9NP56	450 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	LHX9	Q9NQ69	397 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	FGF21	Q9NSA1	209 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	ANKMY1	Q9P2S6	941 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	KCND3	Q9UK17	655 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	TLK1	Q9UKI8	766 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	INTU	Q9ULD6	942 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	MAN2B2	Q9Y2E5	1009 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	PCDHGA6	Q9Y5G7	932 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	DOPEY2	Q9Y3R5	2298 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	LRRK2	Q5S007	2527 aa		10.29	□□□□□ -0.76
LSM4-205	ENST00000597776	UBA6	A0AVT1	1052 aa	Predicted RBP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	OR6C74	A6NCV1	312 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	OR5K3	A6NET4	321 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	TLCD2	A6NGC4	264 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	C21orf140	B9A014	251 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	STX7	O15400	261 aa	Known RBP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	DDX3Y	O15523	660 aa	Known RBP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	RFPL1	O75677	317 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	ZRANB2	O95218	330 aa	Known RBP eCLIP	10.28	□□□□□ -0.76	3e-6	■■■■■ 27.8
LSM4-205	ENST00000597776	MT-ND3	P03897	115 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	MSH3	P20585	1137 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	RBL1	P28749	1068 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	ARL4D	P49703	201 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	MLLT10	P55197	1068 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	KLRB1	Q12918	225 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	ITGA9	Q13797	1035 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	GPR19	Q15760	415 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	LONRF2	Q1L5Z9	754 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	CPZ	Q66K79	652 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	TCTN3	Q6NUS6	607 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	KLHL35	Q6PF15	583 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	ASB18	Q6ZVZ8	466 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	MICALCL	Q6ZW33	695 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	DAAM2	Q86T65	1068 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	KATNAL2	Q8IYT4	538 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	LILRA3	Q8N6C8	439 aa	Predicted RBP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	OR4K2	Q8NGD2	314 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	ZNF398	Q8TD17	642 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	RMDN2	Q96LZ7	410 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	C12orf66	Q96MD2	445 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	VAT1	Q99536	393 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	GBA3	Q9H227	469 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	SMOX	Q9NWM0	555 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	HRASLS2	Q9NWW9	162 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	FKBPL	Q9UIM3	349 aa		10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.28	□□□□□ -0.76
LSM4-205	ENST00000597776	MACROD2	A1Z1Q3	448 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	CLEC18A	A5D8T8	446 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	MGAT4D	A6NG13	374 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	HACD1	B0YJ81	288 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	AKR1B15	C9JRZ8	316 aa	Predicted RBP	10.27	□□□□□ -0.77
LSM4-205	ENST00000597776		H7C0C1	242 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	SGTA	O43765	313 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	SRP72	O76094	671 aa	Known RBP	10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	POLB	P06746	335 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	SLC35G4	P0C7Q5	338 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	PTPN4	P29074	926 aa		10.27	□□□□□ -0.77
LSM4-205	ENST00000597776	MAGEA1	P43355	309 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms