RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ACTN2P35609 894 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 PNLIPRP2P54317 469 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 SNRPEP62304 92 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 FAM98BQ52LJ0 330 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 IGSF11Q5DX21 431 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 CCNYL2Q5T2Q4 361 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 ALS2CLQ60I27 953 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 CFAP161Q6P656 301 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 PAFAH2Q99487 392 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 SLX1AQ9BQ83 275 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 KIFC3Q9BVG8 833 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 TEX12Q9BXU0 123 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 TFB2MQ9H5Q4 396 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 MBNL1Q9NR56 388 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 SLC38A7Q9NVC3 462 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 HACL1Q9UJ83 578 aa4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 FBXO2Q9UK22 296 aaPredicted RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 PTRH2Q9Y3E5 179 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-204ENST00000581226 A0A1W2PPI3 338 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 PRSS47A8MTI9 375 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 GRID2O43424 1007 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 SYNCRIPO60506 623 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 AVILO75366 819 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 GCNT3O95395 438 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 PRSS1P07477 247 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 MMP15P51511 669 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 PSMC6P62333 389 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 CXCL9Q07325 125 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 KIR2DS3Q14952 304 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 FAM109BQ6ICB4 259 aaPredicted RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 MARK2Q7KZI7 788 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF329Q86UD4 541 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 KBTBD6Q86V97 674 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 STAMBPL1Q96FJ0 436 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 RSRC1Q96IZ7 334 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF354BQ96LW1 612 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 C17orf77Q96MU5 243 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 SLC22A12Q96S37 553 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 VPS33BQ9H267 617 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 KCNK15Q9H427 330 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 MIOSQ9NXC5 875 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 WSB2Q9NYS7 404 aaPredicted RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 PTTG2Q9NZH5 202 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 LARSQ9P2J5 1176 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 JRKLQ9Y4A0 524 aa4.29□□□□□ -1.72
SMCHD1-204ENST00000581226 LINC01565O15544 149 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 GPR137BO60478 399 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 ZWINTO95229 277 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 SP1P08047 785 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 EIF2DP41214 584 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PSMC4P43686 418 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 ARSEP51690 589 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 LINC01547P58512 204 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 HYAL1Q12794 435 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 STK4Q13043 487 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PLA2G7Q13093 441 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 DMP1Q13316 513 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 MELKQ14680 651 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PCLAFQ15004 111 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 NTRK2Q16620 822 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 GCNT6Q5T4J0 391 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 ADALQ6DHV7 355 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 KLC3Q6P597 504 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 SLC27A1Q6PCB7 646 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 HES6Q96HZ4 224 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PRMT6Q96LA8 375 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 FAM81BQ96LP2 452 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF582Q96NG8 517 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 MXD3Q9BW11 206 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PPIL3Q9H2H8 161 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 SLA2Q9H6Q3 261 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 APOBEC3GQ9HC16 384 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 HHATLQ9HCP6 504 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 PSD3Q9NYI0 1048 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 ZNF148Q9UQR1 794 aa4.28□□□□□ -1.72
SMCHD1-204ENST00000581226 DOCK7Q96N67 2140 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 TEX13DA0A0J9YY54 714 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 A8MV72 311 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 K7ENM7 598 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 ADAMDEC1O15204 470 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 AHCYL1O43865 530 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 PRKNO60260 465 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 ENTPD3O75355 529 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 BEST1O76090 585 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 CAVIN2O95810 425 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 LDLRP01130 860 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 VPREB1P12018 145 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 PAX1P15863 534 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 TRIM21P19474 475 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 MSH3P20585 1137 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 ANOS1P23352 680 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 STAT2P52630 851 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 KRTAP24-1Q3LI83 254 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 KRT79Q5XKE5 535 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 TMCO3Q6UWJ1 677 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 HAUS6Q7Z4H7 955 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 LDB1Q86U70 411 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 LINC00346Q8IVM7 164 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 MCUQ8NE86 351 aa4.27□□□□□ -1.73
SMCHD1-204ENST00000581226 KLHDC9Q8NEP7 349 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms