RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 HLTFQ14527 1009 aaKnown RBP eCLIP20.26■□□□□ 0.83
VPS53-210ENST00000571456 ZCCHC8Q6NZY4 707 aaKnown RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 DHRS13Q6UX07 377 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 KIAA0408Q6ZU52 694 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 MARK2Q7KZI7 788 aaKnown RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 TAF8Q7Z7C8 310 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 TMPRSS12Q86WS5 348 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 RELL1Q8IUW5 271 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 OTUD6BQ8N6M0 293 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 RASGEF1AQ8N9B8 481 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 AVL9Q8NBF6 648 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 FBXO36Q8NEA4 188 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 TMEM168Q9H0V1 697 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 FAM96AQ9H5X1 160 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 C20orf96Q9NUD7 363 aaPredicted RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 CHMP2BQ9UQN3 213 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 USP9XQ93008 2570 aaPredicted RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 ESYT3A0FGR9 886 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 OR51F1A6NGY5 319 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 PRMT5O14744 637 aaPredicted RBP20.25■□□□□ 0.83
VPS53-210ENST00000571456 GPR39O43194 453 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 SDC3O75056 442 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 NDUFS3O75489 264 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 OR56A5P0C7T3 313 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 RPS3P23396 243 aaKnown RBP eCLIP20.25■□□□□ 0.83
VPS53-210ENST00000571456 IL9RQ01113 521 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 CTBSQ01459 385 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 KHDC1Q4VXA5 237 aaKnown RBP20.25■□□□□ 0.83
VPS53-210ENST00000571456 C6orf132Q5T0Z8 1188 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 TMEM220Q6QAJ8 160 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 CES3Q6UWW8 571 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 GALNT7Q86SF2 657 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 AMZ2Q86W34 360 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 KCNMB4Q86W47 210 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 CILP2Q8IUL8 1156 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 PALM2Q8IXS6 379 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 GSDMBQ8TAX9 411 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 CERS2Q96G23 380 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 FMO2Q99518 471 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 CLPBQ9H078 707 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 TCEAL2Q9H3H9 227 aaPredicted RBP20.25■□□□□ 0.83
VPS53-210ENST00000571456 SAYSD1Q9NPB0 183 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 PCDHB1Q9Y5F3 818 aa20.25■□□□□ 0.83
VPS53-210ENST00000571456 OR5K4A6NMS3 321 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 H3BMM5 538 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 YY2O15391 372 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 MTX2O75431 263 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 FTH1P02794 183 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 RPIAP49247 311 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 CDKN1CP49918 316 aaPredicted RBP20.24■□□□□ 0.83
VPS53-210ENST00000571456 DUSP3P51452 185 aaPredicted RBP20.24■□□□□ 0.83
VPS53-210ENST00000571456 PLOD1Q02809 727 aaPredicted RBP20.24■□□□□ 0.83
VPS53-210ENST00000571456 INSCQ1MX18 579 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 UNC5AQ6ZN44 842 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 CHST15Q7LFX5 561 aaPredicted RBP20.24■□□□□ 0.83
VPS53-210ENST00000571456 GATAD2AQ86YP4 633 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 ZNF547Q8IVP9 402 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 CNTN4Q8IWV2 1026 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 BEND7Q8N7W2 519 aaPredicted RBP20.24■□□□□ 0.83
VPS53-210ENST00000571456 OR6C4Q8NGE1 309 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 IFT81Q8WYA0 676 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 ARFGAP3Q9NP61 516 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 UCKL1Q9NWZ5 548 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 NSMCE4AQ9NXX6 385 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 COMMD10Q9Y6G5 202 aa20.24■□□□□ 0.83
VPS53-210ENST00000571456 MGAT4DA6NG13 374 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 ERVH48-1M5A8F1 160 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 ACTR1BP42025 376 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 ACTR1AP61163 376 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 B4GALNT1Q00973 533 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 C1orf61Q13536 156 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 SLMAPQ14BN4 828 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 ZNF648Q5T619 568 aaPredicted RBP20.23■□□□□ 0.83
VPS53-210ENST00000571456 ZNF470Q6ECI4 717 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 WASH2PQ6VEQ5 465 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 C11orf96Q7Z7L8 435 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 OR2L2Q8NH16 312 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 SGF29Q96ES7 293 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 PWWP2AQ96N64 755 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 PANX3Q96QZ0 392 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 BOCQ9BWV1 1114 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 WASH6PQ9NQA3 447 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 GNPTGQ9UJJ9 305 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 AK5Q9Y6K8 562 aa20.23■□□□□ 0.83
VPS53-210ENST00000571456 OR2AG2A6NM03 316 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 KPNA5O15131 536 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 BANF1O75531 89 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 POP7O75817 140 aaKnown RBP20.22■□□□□ 0.83
VPS53-210ENST00000571456 ESR1P03372 595 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 RHOXF2BP0C7M4 288 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 GIMD1P0DJR0 217 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CDK4P11802 303 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 ACP5P13686 325 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 IDSP22304 550 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CA5AP35218 305 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 MAGEA4P43358 317 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CTSCP53634 463 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 TRADDQ15628 312 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 TAF1BQ53T94 588 aaPredicted RBP20.22■□□□□ 0.83
VPS53-210ENST00000571456 TEX35Q5T0J7 233 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms