RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 GPC4O75487 556 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SNUPNO95149 360 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 PRDX3P30048 256 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 EIF2DP41214 584 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 P2RY2P41231 377 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 HSPA7P48741 367 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 HK2P52789 917 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 DCDC1P59894 354 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 LCP2Q13094 533 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 ADGRE1Q14246 886 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 CCDC85BQ15834 202 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 CRY1Q16526 586 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 PHKG1Q16816 387 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 FAM46CQ5VWP2 391 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 RINLQ6ZS11 566 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 MYLK4Q86YV6 388 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 RAVER1Q8IY67 606 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 CLYBLQ8N0X4 340 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SMRP1Q8NCR6 262 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 NUS1Q96E22 293 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 PTCD3Q96EY7 689 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 PDLIM5Q96HC4 596 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 FAR2Q96K12 515 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 CDK15Q96Q40 435 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 RAB3IPQ96QF0 476 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 LRMDAQ9H2I8 198 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 ZBTB26Q9HCK0 441 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 WWOXQ9NZC7 414 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SORCS3Q9UPU3 1222 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 BTRCQ9Y297 605 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 ANGPTL3Q9Y5C1 460 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 PTGDR2Q9Y5Y4 395 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 LRRK1Q38SD2 2015 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 A0A1W2PP55 124 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 STX16-NPEPL1H3BU86 382 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 STX16O14662 325 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 AZIN1O14977 448 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SPINT1O43278 529 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 HNRNPCL1O60812 293 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 KATNA1O75449 491 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 RNASEH2AO75792 299 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 EZRP15311 586 aaKnown RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 VCLP18206 1134 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 GDF5P43026 501 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SATB1Q01826 763 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 GALNT1Q10472 559 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 TMEM115Q12893 351 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 PPP1R3AQ16821 1122 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SYTL3Q4VX76 610 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 CYB5D1Q6P9G0 228 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 SCIMPQ6UWF3 145 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 MBOAT1Q6ZNC8 495 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 PHYKPLQ8IUZ5 450 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 TEX9Q8N6V9 391 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 CEP70Q8NHQ1 597 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 FBXO27Q8NI29 283 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 DLG3Q92796 817 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 DTD2Q96FN9 168 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 ASB2Q96Q27 587 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 BTBD10Q9BSF8 475 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 TTYH1Q9H313 450 aaPredicted RBP6.95□□□□□ -1.3
SMG1-215ENST00000568239 HEBP1Q9NRV9 189 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 ARL15Q9NXU5 204 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 TAS2R1Q9NYW7 299 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 NUDT4Q9NZJ9 180 aa6.95□□□□□ -1.3
SMG1-215ENST00000568239 IGLV3-16A0A075B6K0 115 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 A8MUI8 341 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 H0Y858 1186 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 ARNTLO00327 626 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 SDHDO14521 159 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 AREL1O15033 823 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 TSPAN6O43657 245 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 RPS17P08708 135 aaKnown RBP6.94□□□□□ -1.3
SMG1-215ENST00000568239 HIST1H2AGP0C0S8 130 aaPredicted RBP6.94□□□□□ -1.3
SMG1-215ENST00000568239 HIST1H2ADP20671 130 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 RPIAP49247 311 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 CTSCP53634 463 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 ELF3P78545 371 aaPredicted RBP6.94□□□□□ -1.3
SMG1-215ENST00000568239 PON2Q15165 354 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 TBCCQ15814 346 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 CST6Q15828 149 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 LDLRAP1Q5SW96 308 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 METTL21CQ5VZV1 264 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 SDE2Q6IQ49 451 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 TMEM220Q6QAJ8 160 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 UBE2R2Q712K3 238 aaPredicted RBP6.94□□□□□ -1.3
SMG1-215ENST00000568239 TRAPPC5Q8IUR0 188 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 VRK3Q8IV63 474 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 HDDC3Q8N4P3 179 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 CDYL2Q8N8U2 506 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 RASGEF1AQ8N9B8 481 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 DDHD1Q8NEL9 900 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 OR52B6Q8NGF0 335 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 TWIST2Q8WVJ9 160 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 C19orf60Q96EN9 201 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 MSLNLQ96KJ4 702 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 HIST1H2AHQ96KK5 128 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 NECTIN4Q96NY8 510 aa6.94□□□□□ -1.3
SMG1-215ENST00000568239 LENG8Q96PV6 779 aaPredicted RBP6.94□□□□□ -1.3
SMG1-215ENST00000568239 HIST1H2AJQ99878 128 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms