RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 COX6B1P14854 86 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 AGXTP21549 392 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 CDH3P22223 829 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 EEF1GP26641 437 aaKnown RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 RORAP35398 523 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PTGER4P35408 488 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ARCN1P48444 511 aaKnown RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF165P49910 485 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ADCY2Q08462 1091 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ABRQ12979 859 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ART3Q13508 389 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 GTF2H3Q13889 308 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 SSPNQ14714 243 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 NCF4Q15080 339 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 RPE65Q16518 533 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 DPYSL2Q16555 572 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 QPCTQ16769 361 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 BOLA3Q53S33 107 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 MLIPQ5VWP3 458 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PLEKHA7Q6IQ23 1121 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 CYP4V2Q6ZWL3 525 aaPredicted RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 LRRC49Q8IUZ0 686 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF547Q8IVP9 402 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PARP9Q8IXQ6 854 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 NXPE1Q8N323 547 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 TRAM1L1Q8N609 369 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 GPR26Q8NDV2 337 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 NEK11Q8NG66 645 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 DNAJB14Q8TBM8 379 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 FAR1Q8WVX9 515 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PPM1MQ96MI6 270 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 CSPG4P5Q96PW8 444 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 TRAPPC9Q96Q05 1148 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 WDR77Q9BQA1 342 aaPredicted RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 NUP85Q9BW27 656 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ADGRE3Q9BY15 652 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ABCA2Q9BZC7 2435 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 TRIM7Q9C029 511 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ZFYVE1Q9HBF4 777 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 ZBTB20Q9HC78 741 aaPredicted RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 RAD18Q9NS91 495 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 IMP3Q9NV31 184 aaKnown RBP7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PCMTD2Q9NV79 361 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 TAS2R14Q9NYV8 317 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 SERTAD3Q9UJW9 196 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 SHOC2Q9UQ13 582 aa7.14□□□□□ -1.27
VPS4A-203ENST00000564399 PCM1Q15154 2024 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 OR6C74A6NCV1 312 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 SLC9B1P1A6NJY1 282 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 MASP2O00187 686 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 E2F3O00716 465 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 MAP3K7O43318 606 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 STSP08842 583 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC172P0C7W6 258 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PIRTP0C851 137 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 ATP1A3P13637 1013 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 IL1R2P27930 398 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 HADHAP40939 763 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 FOLR3P41439 243 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CD86P42081 329 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PREPP48147 710 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 DCDC1P59894 354 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 NIPAL4Q0D2K0 466 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 TMEM115Q12893 351 aaPredicted RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CDC16Q13042 620 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PRKAA1Q13131 559 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 XRCC4Q13426 336 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 GALNT3Q14435 633 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 KRT81Q14533 505 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 HIF1AQ16665 826 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CYP2A13Q16696 494 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 KHDC1Q4VXA5 237 aaKnown RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 VWA2Q5GFL6 755 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC122Q5T0U0 273 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PDPK2PQ6A1A2 396 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 ALG1LQ6GMV1 187 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 TIGD7Q6NT04 549 aaPredicted RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PPP1R2P3Q6NXS1 205 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 SPOCD1Q6ZMY3 1216 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 AMZ2Q86W34 360 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 OR1L3Q8NH93 324 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 ARRDC2Q8TBH0 407 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 EID2BQ96D98 161 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CNDP1Q96KN2 507 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 GBP5Q96PP8 586 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 DPH2Q9BQC3 489 aaPredicted RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 DHRS4Q9BTZ2 278 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 GPR63Q9BZJ6 419 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CHST11Q9NPF2 352 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 ATP13A2Q9NQ11 1180 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 P4HTMQ9NXG6 502 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 SUCOQ9UBS9 1254 aaKnown RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 GPN3Q9UHW5 284 aaPredicted RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 NOVA2Q9UNW9 492 aaKnown RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 BTRCQ9Y297 605 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 PTRH2Q9Y3E5 179 aaKnown RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CSAG2Q9Y5P2 127 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 KLF2Q9Y5W3 355 aaPredicted RBP7.13□□□□□ -1.27
VPS4A-203ENST00000564399 CFAP20Q9Y6A4 193 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms