RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ELMO1Q92556 727 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 SKA1Q96BD8 255 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 MTBPQ96DY7 904 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TSSK1BQ9BXA7 367 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TMEM168Q9H0V1 697 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 ARRDC1-AS1Q9H2J1 176 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 LATS2Q9NRM7 1088 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 FAM86C1Q9NVL1 165 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 DNAJC28Q9NX36 388 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TAS2R13Q9NYV9 303 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 TRMT6Q9UJA5 497 aaKnown RBP16.3■□□□□ 0.2
VPS4A-202ENST00000562754 DHRS7Q9Y394 339 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 GPSM3Q9Y4H4 160 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 PCDHGA5Q9Y5G8 931 aa16.3■□□□□ 0.2
VPS4A-202ENST00000562754 A0A1W2PPM1 405 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 MGAT4DA6NG13 374 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 RFPL1O75677 317 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 TNFP01375 233 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CSF2P04141 144 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CELA2BP08218 269 aaPredicted RBP16.29■□□□□ 0.2
VPS4A-202ENST00000562754 SLC35E2BP0CK96 405 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 STMN1P16949 149 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 SLC12A2P55011 1212 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 RAB10P61026 200 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 GRIK2Q13002 908 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 BOP1Q14137 746 aaKnown RBP16.29■□□□□ 0.2
VPS4A-202ENST00000562754 NFE2L1Q14494 772 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 GBX1Q14549 363 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CCDC6Q16204 474 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 INSCQ1MX18 579 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 TNFAIP8L3Q5GJ75 292 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 PRAMEF14Q5SWL7 426 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 RABEPKQ7Z6M1 372 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CROCCP2Q86T23 111 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 AMZ2Q86W34 360 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 ZBTB2Q8N680 514 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CCL4L1Q8NHW4 92 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CEP76Q8TAP6 659 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 TSPAN17Q96FV3 270 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 LRRC61Q9BV99 259 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 SMOC1Q9H4F8 434 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 COG4Q9H9E3 785 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 POPDC3Q9HBV1 291 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 TMBIM4Q9HC24 238 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 SPATS2LQ9NUQ6 558 aaKnown RBP16.29■□□□□ 0.2
VPS4A-202ENST00000562754 APOBEC3BQ9UH17 382 aaKnown RBP16.29■□□□□ 0.2
VPS4A-202ENST00000562754 CDYLQ9Y232 598 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 KCNK6Q9Y257 313 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 DNAJC16Q9Y2G8 782 aa16.29■□□□□ 0.2
VPS4A-202ENST00000562754 DNMT3AQ9Y6K1 912 aaPredicted RBP16.29■□□□□ 0.2
VPS4A-202ENST00000562754 SLC5A10A0PJK1 596 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 RGS16O15492 202 aaPredicted RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 GSTM1P09488 218 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF37AP17032 561 aaPredicted RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 JUNDP17535 347 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 KRT15P19012 456 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 AK4P27144 223 aaPredicted RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 PREPP48147 710 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 CTBSQ01459 385 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 GSTM4Q03013 218 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 DMPKQ09013 629 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 DNAJC3Q13217 504 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 PDAP1Q13442 181 aaKnown RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 TRIM61Q5EBN2 209 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 ACSBG2Q5FVE4 666 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 PPM1JQ5JR12 505 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 SLC23A3Q6PIS1 610 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 PAQR3Q6TCH7 311 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 OTOAQ7RTW8 1153 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 TRABD2AQ86V40 505 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 NRROSQ86YC3 692 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 VRK3Q8IV63 474 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 CPNE9Q8IYJ1 553 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 INPP5DQ92835 1189 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 ATOH1Q92858 354 aaPredicted RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 PGM2Q96G03 612 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 SH3GL2Q99962 352 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 CENPHQ9H3R5 247 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 ERVMER34-1Q9H9K5 563 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 KLC4Q9NSK0 619 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 TRNAU1APQ9NX07 287 aaKnown RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.28■□□□□ 0.2
VPS4A-202ENST00000562754 KLHL42Q9P2K6 505 aa16.28■□□□□ 0.2
VPS4A-202ENST00000562754 C17orf113A0A1B0GUU1 675 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 GPC4O75487 556 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 TSPAN12O95859 305 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 MT-ND3P03897 115 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 C2P06681 752 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 MYZAPP0CAP1 466 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 CRABP2P29373 138 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 TYK2P29597 1187 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 CCNFP41002 786 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 NBL1P41271 181 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 BLKP51451 505 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 IRF9Q00978 393 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 LRP8Q14114 963 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 SHBQ15464 509 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF423Q2M1K9 1284 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 SYTL3Q4VX76 610 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 PLA2G2CQ5R387 149 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms