RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ZC3HC1Q86WB0 502 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 EID2Q8N6I1 236 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 HM13Q8TCT9 377 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 LINC00615Q96LM1 132 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 AARSD1Q9BTE6 412 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 EPB41L4BQ9H329 900 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 PRDM8Q9NQV8 689 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 SPATS2LQ9NUQ6 558 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 TBC1D29Q9UFV1 150 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 DNMT3AQ9Y6K1 912 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 SPAG17Q6Q759 2223 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 CEP192Q8TEP8 1941 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 DOCK9Q9BZ29 2069 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 TRBV23OR9-2A0A075B6M9 112 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 PCDHGA12O60330 932 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 INHBAP08476 426 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 IDSP22304 550 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 TMED2Q15363 201 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 STPG1Q5TH74 334 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GALNT7Q86SF2 657 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 SIDT2Q8NBJ9 832 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 VPS39Q96JC1 886 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 PAFAH2Q99487 392 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 RBBP8Q99708 897 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 FUT8Q9BYC5 575 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 RHOJQ9H4E5 214 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 COG4Q9H9E3 785 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GULP1Q9UBP9 304 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 CSNK1G3Q9Y6M4 447 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 FRYLO94915 3013 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GON4LQ3T8J9 2241 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM95CA0A1B0GW59 222 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 CTIFO43310 598 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 VPS26AO75436 327 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 APOA4P06727 396 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 ZNF883P0CG24 379 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 MSH2P43246 934 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 CLCNKAP51800 687 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 BMPR2Q13873 1038 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 INAVAQ3KP66 663 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GRTP1Q5TC63 336 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 HECTD2Q5U5R9 776 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 PIM3Q86V86 326 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 SPNS2Q8IVW8 549 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 SFTPA2Q8IWL1 248 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 ZDHHC1Q8WTX9 485 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 SKA2Q8WVK7 121 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 KCNJ9Q92806 393 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 TMEM159Q96B96 161 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM122AQ96E09 287 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GPR21Q99679 349 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 CCDC77Q9BR77 488 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 NLGN3Q9NZ94 848 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 GALPQ9UBC7 116 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 SLC39A10Q9ULF5 831 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 BTBD3Q9Y2F9 522 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 COMMD10Q9Y6G5 202 aa13.78□□□□□ -0.2
VIPAS39-208ENST00000556412 ZNF106Q9H2Y7 1883 aaKnown RBP13.77□□□□□ -0.2
VIPAS39-208ENST00000556412 C17orf113A0A1B0GUU1 675 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 KLHL33A6NCF5 533 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 SMIM23A6NLE4 172 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 TRIM38O00635 465 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 KCNJ13O60928 360 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 EML2O95834 649 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 SHBGP04278 402 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC35G4P0C7Q5 338 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 SPRP35270 261 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 GRK6P43250 576 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 PGGT1BP53609 377 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC12A2P55011 1212 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 CDKN2DP55273 166 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 FAM45BPQ6NSW5 357 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 KANSL1Q7Z3B3 1105 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 ZBTB2Q8N680 514 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 ACVR1CQ8NER5 493 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 FAM45AQ8TCE6 357 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 RHBDD1Q8TEB9 315 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 PATE1Q8WXA2 126 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 WWP1Q9H0M0 922 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 TAS2R13Q9NYV9 303 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 TRMT6Q9UJA5 497 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 CORO1CQ9ULV4 474 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 MTO1Q9Y2Z2 717 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 VWA7Q9Y334 891 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 PCDHGB2Q9Y5G2 931 aa13.77□□□□□ -0.21
VIPAS39-208ENST00000556412 ZFHX2Q9C0A1 2572 aaPredicted RBP13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 LIN7AO14910 233 aaPredicted RBP13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 FLRT2O43155 660 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 SH3BP5O60239 455 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 GSTM1P09488 218 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 MYF5P13349 255 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 CD59P13987 128 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 AOAHP28039 575 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 PDHA2P29803 388 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 HALP42357 657 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 LIMK2P53671 638 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 GSTM4Q03013 218 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 DMPKQ09013 629 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC14A1Q13336 389 aa13.76□□□□□ -0.21
VIPAS39-208ENST00000556412 PDAP1Q13442 181 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms