RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SHOC2Q9UQ13 582 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ANKRD66B4E2M5 251 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 TMEM150CB9EJG8 249 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 LDB2O43679 373 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 MFSD11O43934 449 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 ALPPP05187 535 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 STSP08842 583 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 EDN3P14138 238 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 KRTAP10-9P60411 292 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 RPL26P61254 145 aaKnown RBP12.58□□□□□ -0.4
VPS29-211ENST00000553128 MMRN1Q13201 1228 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 ZNF385CQ66K41 422 aaPredicted RBP12.58□□□□□ -0.4
VPS29-211ENST00000553128 TRAPPC5Q8IUR0 188 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 CLEC1AQ8NC01 280 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 ITLN2Q8WWU7 325 aaPredicted RBP12.58□□□□□ -0.4
VPS29-211ENST00000553128 TRAPPC9Q96Q05 1148 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 ZSCAN5AQ9BUG6 496 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 TMEM63CQ9P1W3 806 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 RPL26L1Q9UNX3 145 aaKnown RBP12.58□□□□□ -0.4
VPS29-211ENST00000553128 BTRCQ9Y297 605 aa12.58□□□□□ -0.4
VPS29-211ENST00000553128 ZNF469Q96JG9 3925 aaPredicted RBP12.58□□□□□ -0.4
VPS29-211ENST00000553128 OR6C74A6NCV1 312 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 SLC9B1P1A6NJY1 282 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 CD48P09326 243 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 RARAP10276 462 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 BPIP17213 487 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 EEF1GP26641 437 aaKnown RBP12.57□□□□□ -0.4
VPS29-211ENST00000553128 SERPINB6P35237 376 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 CD86P42081 329 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 HALP42357 657 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 ZNF165P49910 485 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 ART3Q13508 389 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 NFE2L1Q14494 772 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 KRT31Q15323 416 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 TMTC4Q5T4D3 741 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 KLHL35Q6PF15 583 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 ZNF295-AS1Q8N0V1 137 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 FAR1Q8WVX9 515 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 NRTNQ99748 197 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 WDR77Q9BQA1 342 aaPredicted RBP12.57□□□□□ -0.4
VPS29-211ENST00000553128 SYT11Q9BT88 431 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 TRIM8Q9BZR9 551 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 RUBCNLQ9H714 662 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 ZFYVE1Q9HBF4 777 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 PCDH18Q9HCL0 1135 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 P4HTMQ9NXG6 502 aa12.57□□□□□ -0.4
VPS29-211ENST00000553128 CCDC78A2IDD5 438 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 MATN3O15232 486 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 VEGFDO43915 354 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 CNOT3O75175 753 aaKnown RBP12.56□□□□□ -0.4
VPS29-211ENST00000553128 ALOX12BO75342 701 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 CBSLP0DN79 551 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 POLR2CP19387 275 aaPredicted RBP12.56□□□□□ -0.4
VPS29-211ENST00000553128 CYP2A7P20853 494 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 PTGER4P35408 488 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 CBSP35520 551 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 CTSCP53634 463 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 DCDC1P59894 354 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 GALNT2Q10471 571 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 TMEM115Q12893 351 aaPredicted RBP12.56□□□□□ -0.4
VPS29-211ENST00000553128 SSPNQ14714 243 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 ATP13A5Q4VNC0 1218 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 MLIPQ5VWP3 458 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 TMC3Q7Z5M5 1100 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 OOSP2Q86WS3 158 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 TM9SF4Q92544 642 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 FER1L6-AS2Q96M78 137 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 IMP3Q9NV31 184 aaKnown RBP12.56□□□□□ -0.4
VPS29-211ENST00000553128 KLF2Q9Y5W3 355 aaPredicted RBP12.56□□□□□ -0.4
VPS29-211ENST00000553128 ZGRF1Q86YA3 2104 aa12.56□□□□□ -0.4
VPS29-211ENST00000553128 A0A1B0GUH1 482 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 AURKAO14965 403 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 GPR39O43194 453 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 ZNF749O43361 778 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 POP7O75817 140 aaKnown RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 MTHFD1P11586 935 aaKnown RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 ATP1A3P13637 1013 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 CA4P22748 312 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 CES1P23141 567 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 PCK1P35558 622 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 LMAN1P49257 510 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 KCNK10P57789 538 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 BECN1Q14457 450 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 ZFYVE27Q5T4F4 411 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 C1orf189Q5VU69 101 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 PDPK2PQ6A1A2 396 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 PPP1R32Q7Z5V6 425 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 SPDYE1Q8NFV5 336 aaPredicted RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 NAT14Q8WUY8 206 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 TRIB3Q96RU7 358 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 INSM2Q96T92 566 aaPredicted RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 SLX1AQ9BQ83 275 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 KLHL25Q9H0H3 589 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 FANCEQ9HB96 536 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 BPIFA1Q9NP55 256 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 NFKBIL1Q9UBC1 381 aaPredicted RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 PTRH2Q9Y3E5 179 aaKnown RBP12.55□□□□□ -0.4
VPS29-211ENST00000553128 ZNF711Q9Y462 761 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 PKDREJQ9NTG1 2253 aa12.55□□□□□ -0.4
VPS29-211ENST00000553128 SVILO95425 2214 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms