RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SRSF5Q13243 272 aaKnown RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 DMC1Q14565 340 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 HERC3Q15034 1050 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 TAZQ16635 292 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 MS4A13Q5J8X5 152 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 FAM209AQ5JX71 171 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 KCTD8Q6ZWB6 473 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 SYT13Q7L8C5 426 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 PTAR1Q7Z6K3 402 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 C14orf80Q86SX3 495 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 CIR1Q86X95 450 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 LGI2Q8N0V4 545 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF781Q8N8C0 355 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ZBTB44Q8NCP5 570 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 FAM156AQ8NDB6 213 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 PPWD1Q96BP3 646 aaKnown RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 LRRC39Q96DD0 335 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 PGAP3Q96FM1 320 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 RNF157Q96PX1 679 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 TKTL2Q9H0I9 626 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 SIK2Q9H0K1 926 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 NOL11Q9H8H0 719 aaKnown RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 NANOGQ9H9S0 305 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 PLAC1Q9HBJ0 212 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 C20orf96Q9NUD7 363 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ABCB8Q9NUT2 735 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ADA2Q9NZK5 511 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 SUCOQ9UBS9 1254 aaKnown RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 SLC27A6Q9Y2P4 619 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 GOLGA8QA0A0J9YX86 632 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 GOLGA8OA6NCC3 632 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CLDN25C9JDP6 229 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 GOLGA8NF8WBI6 632 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TPP1O14773 563 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ATG13O75143 517 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PAGE1O75459 146 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CKMT2P17540 419 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TACR2P21452 398 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SLC7A1P30825 629 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CD70P32970 193 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 HPCAL1P37235 193 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PLA2G5P39877 138 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 NBL1P41271 181 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CXCR3P49682 368 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TPTEP56180 551 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 MRPS21P82921 87 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 OCA2Q04671 838 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SELENBP1Q13228 472 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 E2F2Q14209 437 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TRIM25Q14258 630 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CRY1Q16526 586 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 DPYSL2Q16555 572 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF528Q3MIS6 628 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PERM1Q5SV97 790 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ARTNQ5T4W7 220 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 FBXL22Q6P050 247 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TRMT10BQ6PF06 316 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PACRGLQ8N7B6 248 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ANKFN1Q8N957 763 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 LILRB4Q8NHJ6 448 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PCDH19Q8TAB3 1148 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 MAPK15Q8TD08 544 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 IGSF8Q969P0 613 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 FAM122AQ96E09 287 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 KCTD15Q96SI1 283 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SH3GL1Q99961 368 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 IER2Q9BTL4 223 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ADI1Q9BV57 179 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 WDR12Q9GZL7 423 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 MOV10Q9HCE1 1003 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 HMG20AQ9NP66 347 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SMOXQ9NWM0 555 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CACNA2D2Q9NY47 1150 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PAK5Q9P286 719 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 VANGL2Q9ULK5 521 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CNOT6Q9ULM6 557 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 MMP17Q9ULZ9 603 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TRAF6Q9Y4K3 522 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 HS3ST4Q9Y661 456 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SPAG17Q6Q759 2223 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 SOCS2O14508 198 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 NEMP1O14524 444 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 HRO43593 1189 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 JRKO75564 520 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 PAPSS2O95340 614 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ALDOAP04075 364 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 GNAO1P09471 354 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 GOT1P17174 413 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 EEF1DP29692 281 aaKnown RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 ADSLP30566 484 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-216ENST00000552909 IDUAP35475 653 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 OPRL1P41146 370 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 TFDP2Q14188 446 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 NEDD8Q15843 81 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 INSCQ1MX18 579 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 HMBOX1Q6NT76 420 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 KIAA1211LQ6NV74 962 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 NPNTQ6UXI9 565 aa7.57□□□□□ -1.2
LIMA1-216ENST00000552909 CHSY3Q70JA7 882 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms