RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SLC4A11Q8NBS3 891 aa4□□□□□ -1.77
VPS29-205ENST00000548539 ZNF114Q8NC26 417 aa4□□□□□ -1.77
VPS29-205ENST00000548539 TSPAN14Q8NG11 270 aa4□□□□□ -1.77
VPS29-205ENST00000548539 OR10S1Q8NGN2 331 aa4□□□□□ -1.77
VPS29-205ENST00000548539 OR2AJ1Q8NGZ0 328 aa4□□□□□ -1.77
VPS29-205ENST00000548539 OR52I2Q8NH67 350 aa4□□□□□ -1.77
VPS29-205ENST00000548539 THAP6Q8TBB0 222 aa4□□□□□ -1.77
VPS29-205ENST00000548539 PPP4R1Q8TF05 950 aa4□□□□□ -1.77
VPS29-205ENST00000548539 ABTB1Q969K4 478 aaPredicted RBP4□□□□□ -1.77
VPS29-205ENST00000548539 PIGTQ969N2 578 aa4□□□□□ -1.77
VPS29-205ENST00000548539 SPACA9Q96E40 222 aaPredicted RBP4□□□□□ -1.77
VPS29-205ENST00000548539 TMEM19Q96HH6 336 aa4□□□□□ -1.77
VPS29-205ENST00000548539 FAM81BQ96LP2 452 aa4□□□□□ -1.77
VPS29-205ENST00000548539 FER1L6-AS2Q96M78 137 aa4□□□□□ -1.77
VPS29-205ENST00000548539 ZNF582Q96NG8 517 aaPredicted RBP4□□□□□ -1.77
VPS29-205ENST00000548539 NAA11Q9BSU3 229 aaPredicted RBP4□□□□□ -1.77
VPS29-205ENST00000548539 LRMDAQ9H2I8 198 aa4□□□□□ -1.77
VPS29-205ENST00000548539 PCDH9Q9HC56 1237 aa4□□□□□ -1.77
VPS29-205ENST00000548539 MBNL1Q9NR56 388 aaKnown RBP4□□□□□ -1.77
VPS29-205ENST00000548539 SELENONQ9NZV5 590 aa4□□□□□ -1.77
VPS29-205ENST00000548539 RCC2Q9P258 522 aaKnown RBP4□□□□□ -1.77
VPS29-205ENST00000548539 RHCGQ9UBD6 479 aa4□□□□□ -1.77
VPS29-205ENST00000548539 MALT1Q9UDY8 824 aa4□□□□□ -1.77
VPS29-205ENST00000548539 SIX4Q9UIU6 781 aa4□□□□□ -1.77
VPS29-205ENST00000548539 OSGIN1Q9UJX0 560 aa4□□□□□ -1.77
VPS29-205ENST00000548539 OR2W1Q9Y3N9 320 aa4□□□□□ -1.77
VPS29-205ENST00000548539 PRAG1Q86YV5 1406 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 IGLV5-37A0A075B6J1 123 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 A0A0G2JPF8 293 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 OR2M5A3KFT3 312 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 C4orf47A7E2U8 309 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 HNRNPCL3B7ZW38 293 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 CCER2I3L3R5 266 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 TO15178 435 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 XRCC3O43542 346 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 SSX4O60224 188 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 TBCAO75347 108 aaKnown RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 PMS2P2O95744 297 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 KRT19P08727 400 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 HNRNPCL4P0DMR1 293 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 POLR2CP19387 275 aaPredicted RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 GNL1P36915 607 aaPredicted RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 CCR10P46092 362 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 AMPHP49418 695 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 PEX5P50542 639 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 TROAPQ12815 778 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 PLA2G7Q13093 441 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 TNIP1Q15025 636 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 CST9LP1Q5W188 147 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 KRT39Q6A163 491 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 CCDC186Q7Z3E2 898 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 ANKRD23Q86SG2 305 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 RNF113BQ8IZP6 322 aaKnown RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 C1orf87Q8N0U7 546 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 PI4KAP1Q8N8J0 262 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 KIF18AQ8NI77 898 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 MAGEC3Q8TD91 643 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 NEUROG1Q92886 237 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 WBP1Q96G27 269 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 SPATA17Q96L03 361 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 OR6C1Q96RD1 312 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 NTPCRQ9BSD7 190 aaKnown RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 C16orf70Q9BSU1 422 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 FNDC11Q9BVV2 318 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 SEZ6LQ9BYH1 1024 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 CSTL1Q9H114 145 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 SLA2Q9H6Q3 261 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 OSER1Q9NX31 292 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 SMARCAL1Q9NZC9 954 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 ZNF224Q9NZL3 707 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 DDX25Q9UHL0 483 aaKnown RBP3.99□□□□□ -1.77
VPS29-205ENST00000548539 SLC24A2Q9UI40 661 aa3.99□□□□□ -1.77
VPS29-205ENST00000548539 PRSS51A0A1B0GVH4 220 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 OR5K3A6NET4 321 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 SRRM3A6NNA2 597 aaPredicted RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 HEPACAM2A8MVW5 462 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 WISP2O76076 250 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 TOMM70O94826 608 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 CELF2O95319 508 aaKnown RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 QDPRP09417 244 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 FDPSP14324 419 aaKnown RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 ITGA2P17301 1181 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 ERCC2P18074 760 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 AZGP1P25311 298 aaKnown RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 RAB28P51157 221 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 CTSCP53634 463 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 HNRNPKP61978 463 aaKnown RBP eCLIP3.98□□□□□ -1.77
VPS29-205ENST00000548539 RELQ04864 619 aaPredicted RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 RUNX1T1Q06455 604 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 TRAF2Q12933 501 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 DLG1Q12959 904 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 SF3B4Q15427 424 aaKnown RBP eCLIP3.98□□□□□ -1.773e-7■■■■■ 36.5
VPS29-205ENST00000548539 TMEM35AQ53FP2 167 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 ARMC4Q5T2S8 1044 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 C1QTNF12Q5T7M4 302 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 RNASEH2BQ5TBB1 312 aaKnown RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 SUSD1Q6UWL2 747 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 Q75L30 129 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 SATL1Q86VE3 508 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms