RNA–Protein interactions for RNA: ENST00000547764.1

PRPF40B-206, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-206ENST00000547764 HOXB3P14651 431 aaPredicted RBP18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 CSF2RBP32927 897 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 EPHA4P54764 986 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 PTK6Q13882 451 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 SEMA3AQ14563 771 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 RPE65Q16518 533 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 PACS1Q6VY07 963 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 CERS6Q6ZMG9 384 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 TMEM26Q6ZUK4 368 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 PPIL6Q8IXY8 311 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 MPP5Q8N3R9 675 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 WDR36Q8NI36 951 aaKnown RBP18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 MFSD3Q96ES6 412 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 SERPINB12Q96P63 405 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 TTC1Q99614 292 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 CCM2Q9BSQ5 444 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 TBC1D10AQ9BXI6 508 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 WWP1Q9H0M0 922 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 UCK1Q9HA47 277 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 XAB2Q9HCS7 855 aaKnown RBP18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 SLC40A1Q9NP59 571 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 POT1Q9NUX5 634 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 ASIC3Q9UHC3 531 aa18.35■□□□□ 0.53
PRPF40B-206ENST00000547764 ACACAQ13085 2346 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 DMXL2Q8TDJ6 3036 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 LILRA5A6NI73 299 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 DUX1O43812 170 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 OR1I1O60431 355 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 POLBP06746 335 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 CASQ1P31415 396 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 MAPK9P45984 424 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 PPM1FP49593 454 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 ZNF658BQ4V348 819 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 PHF19Q5T6S3 580 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 RNASEH2BQ5TBB1 312 aaKnown RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 SYT10Q6XYQ8 523 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 LDB1Q86U70 411 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 OR4D9Q8NGE8 314 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 HM13Q8TCT9 377 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 PRR11Q96HE9 360 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 RUNDC3BQ96NL0 473 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 INSM2Q96T92 566 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 VPS37BQ9H9H4 285 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 CATSPERZQ9NTU4 200 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 TMEM9Q9P0T7 183 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 MARCH4Q9P2E8 410 aaPredicted RBP18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 ANAPC5Q9UJX4 755 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 USP24Q9UPU5 2620 aa18.34■□□□□ 0.53
PRPF40B-206ENST00000547764 IGHV5-10-1A0A0J9YXX1 117 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 SDR42E2A6NKP2 422 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 CCDC188H7C350 402 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 DNALI1O14645 258 aaPredicted RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 CD3EAPO15446 510 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 MPSTP25325 297 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 ARNTP27540 789 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 MAGEA3P43357 314 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 LIMK2P53671 638 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 EIF3IQ13347 325 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 GPR18Q14330 331 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 ARMC3Q5W041 872 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 CASC4Q6P4E1 433 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 TMEM71Q6P5X7 295 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 FOXR1Q6PIV2 292 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 RAB11FIP2Q7L804 512 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 RBM12BQ8IXT5 1001 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 LSMEM2Q8N112 164 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 SPDYE1Q8NFV5 336 aaPredicted RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 NCSTNQ92542 709 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 DPYSL5Q9BPU6 564 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 COG4Q9H9E3 785 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 IMP3Q9NV31 184 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 PCDHGA8Q9Y5G5 932 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 CFAP20Q9Y6A4 193 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 PIKFYVEQ9Y2I7 2098 aa18.33■□□□□ 0.52
PRPF40B-206ENST00000547764 AGRPO00253 132 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 QSOX1O00391 747 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 PLD2O14939 933 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 DXOO77932 396 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 VAPBO95292 243 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 GSTM1P09488 218 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 SLC35G4P0C7Q5 338 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 MTHFD1P11586 935 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 IVDP26440 423 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 PPARGP37231 505 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 DR1Q01658 176 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 GSTM4Q03013 218 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 AARS2Q5JTZ9 985 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 CAPRIN2Q6IMN6 1127 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 WDR74Q6RFH5 385 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 SYDE1Q6ZW31 735 aaPredicted RBP18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 JAMLQ86YT9 394 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 AGGF1Q8N302 714 aaeCLIP18.32■□□□□ 0.525e-8■■■■■ 39.9
PRPF40B-206ENST00000547764 FBXO39Q8N4B4 442 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 RCBTB1Q8NDN9 531 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 GPR150Q8NGU9 434 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 CCDC74BQ96LY2 380 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 RMDN2Q96LZ7 410 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 C12orf66Q96MD2 445 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 SLC46A1Q96NT5 459 aa18.32■□□□□ 0.52
PRPF40B-206ENST00000547764 TRIM56Q9BRZ2 755 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms