RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SERPINB9P50453 376 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CSE1LP55060 971 aaKnown RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 DMWDQ09019 674 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 IFFO1Q0D2I5 559 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 NFATC2Q13469 925 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 DOC2BQ14184 412 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CHRNA6Q15825 494 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TYSND1Q2T9J0 566 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 WSCD2Q2TBF2 565 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 ZNF284Q2VY69 593 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 ATP13A5Q4VNC0 1218 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 SETMARQ53H47 684 aaPredicted RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 ZRANB3Q5FWF4 1079 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 LDLRAP1Q5SW96 308 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 RNF187Q5TA31 235 aaPredicted RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 KIAA0895LQ68EN5 471 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 RFLNAQ6ZTI6 216 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CEP68Q76N32 757 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 MARK2Q7KZI7 788 aaKnown RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 FAM124AQ86V42 546 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 C11orf74Q86VG3 221 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 WDR5BQ86VZ2 330 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CILP2Q8IUL8 1156 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TRIM42Q8IWZ5 723 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CTAGE3PQ8IX95 158 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 UNC5BQ8IZJ1 945 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 RIBC1Q8N443 379 aaPredicted RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 PPM1NQ8N819 430 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 SCAMP4Q969E2 229 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.32□□□□□ -1.24
CD44-228ENST00000528455 TP53INP1Q96A56 240 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TOE1Q96GM8 510 aaKnown RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 ZIM3Q96PE6 472 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 AGAP2Q99490 1192 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 MCMBPQ9BTE3 642 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 RIOK2Q9BVS4 552 aaKnown RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 SPATA16Q9BXB7 569 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 ACBD3Q9H3P7 528 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 GSX1Q9H4S2 264 aaPredicted RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 UGT1A7Q9HAW7 530 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 UGT1A10Q9HAW8 530 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 UGT1A8Q9HAW9 530 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TRIM39Q9HCM9 518 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 SMYD2Q9NRG4 433 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 IARS2Q9NSE4 1012 aaKnown RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 SMOXQ9NWM0 555 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CRIM1Q9NZV1 1036 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 TXNDC16Q9P2K2 825 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 FBXO5Q9UKT4 447 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 CORO1CQ9ULV4 474 aaPredicted RBP7.32□□□□□ -1.24
CD44-228ENST00000528455 DMTF1Q9Y222 760 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 ITM2BQ9Y287 266 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 COMMD10Q9Y6G5 202 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 GPR179Q6PRD1 2367 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 BPTFQ12830 3046 aa7.32□□□□□ -1.24
CD44-228ENST00000528455 EML5Q05BV3 1969 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 NUMA1Q14980 2115 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 IGLV3-16A0A075B6K0 115 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 CCDC78A2IDD5 438 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 FAM47DPA6NHR8 397 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PRR5-ARHGAP8B1AHC4 643 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GOLGA8KD6RF30 607 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 F8W8V4 182 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PRAMEF26H0Y7S4 382 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GOLGA8TH3BQL2 631 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 OPA1O60313 960 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PLXNA2O75051 1894 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 NDUFS2O75306 463 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 NDUFS3O75489 264 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 FAM155BO75949 473 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 KRT37O76014 449 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 KRT38O76015 456 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 SLC25A14O95258 325 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 PRAMEF1O95521 474 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PF4P02776 101 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 RETP07949 1114 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 INHBAP08476 426 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 SNRPAP09012 282 aaKnown RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 RALBP11234 206 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 ZNF7P17097 686 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 SDHBP21912 280 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GABRB3P28472 473 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GCAP28676 217 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GP5P40197 560 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 SKIV2L2P42285 1042 aaKnown RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 NSG1P42857 185 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GPR1P46091 355 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PXNP49023 591 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 YPEL5P62699 121 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 ARHGAP8P85298 464 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 ID3Q02535 119 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 TMEM115Q12893 351 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 CTBP1Q13363 440 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 ITIH4Q14624 930 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 LPAL2Q16609 132 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 SEL1L3Q68CR1 1132 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 FAM151BQ6UXP7 276 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 TIFABQ6ZNK6 161 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 TAS2R42Q7RTR8 314 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 STRA8Q7Z7C7 330 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms