RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	FAM109B	Q6ICB4	259 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-223	ENST00000526553	GAGE2A	Q6NT46	116 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	SLC27A1	Q6PCB7	646 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	FOXP4	Q8IVH2	680 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-223	ENST00000526553	CEP97	Q8IW35	865 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	MCEMP1	Q8IX19	187 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	KLHDC8B	Q8IXV7	354 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	CNBD1	Q8NA66	436 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	SMPDL3B	Q92485	455 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	ZNF501	Q96CX3	271 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-223	ENST00000526553	STAMBPL1	Q96FJ0	436 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	SLX1A	Q9BQ83	275 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	RAD21L1	Q9H4I0	556 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	TRPC7	Q9HCX4	862 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-223	ENST00000526553	GAGE2D	Q9UEU5	116 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	TMEM5	Q9Y2B1	443 aa		4.39	□□□□□ -1.71
CD44-223	ENST00000526553	OR2M5	A3KFT3	312 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	PMS2P5	A8MQ11	134 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553		J3QR06	171 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	EDIL3	O43854	480 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	AHCYL1	O43865	530 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	TPPP	O94811	219 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	BMP10	O95393	424 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	PAK4	O96013	591 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	GH2	P01242	217 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	TFAP2A	P05549	437 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	CRIP2	P52943	208 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	IRX6	P78412	446 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	CREB5	Q02930	508 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	CALD1	Q05682	793 aa	Known RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	EPS8	Q12929	822 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	CHAF1B	Q13112	559 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	MRGPRG-AS1	Q2M3A8	158 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	ASPRV1	Q53RT3	343 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	ADAM5	Q6NVV9	412 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	ENOSF1	Q7L5Y1	443 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	KRT77	Q7Z794	578 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	GALNT13	Q8IUC8	556 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	TTC39C	Q8N584	583 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	OR10V1	Q8NGI7	309 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	TM9SF4	Q92544	642 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	ZNF524	Q96C55	264 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	ZBTB20	Q9HC78	741 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	PAG1	Q9NWQ8	432 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	TSPYL4	Q9UJ04	414 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	EXO1	Q9UQ84	846 aa	Known RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553	SNX8	Q9Y5X2	465 aa		4.38	□□□□□ -1.71
CD44-223	ENST00000526553	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.38	□□□□□ -1.71
CD44-223	ENST00000526553		A0A1W2PR77	199 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	PTGES3L	E9PB15	166 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	TMEM189-UBE2V1	I3L0A0	370 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	STARD3NL	O95772	234 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	AMBP	P02760	352 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	LIPF	P07098	398 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CLTB	P09497	229 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CSH1	P0DML2	217 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CSH2	P0DML3	217 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	POR	P16435	677 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-223	ENST00000526553	GARS	P41250	739 aa	Known RBP	4.37	□□□□□ -1.71
CD44-223	ENST00000526553	MMP15	P51511	669 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CD81	P60033	236 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	MC1R	Q01726	317 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	MBTD1	Q05BQ5	628 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	UBE2V1	Q13404	147 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	DUOXA1	Q1HG43	343 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	DUSP28	Q4G0W2	176 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	TECRL	Q5HYJ1	363 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	WDR38	Q5JTN6	314 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	SFMBT2	Q5VUG0	894 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	TMCO3	Q6UWJ1	677 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CEACAM20	Q6UY09	585 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	CLEC17A	Q6ZS10	378 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	SCYL3	Q8IZE3	742 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	FAM76A	Q8TAV0	307 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	FAM120B	Q96EK7	910 aa	Known RBP	4.37	□□□□□ -1.71
CD44-223	ENST00000526553	F2RL3	Q96RI0	385 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	SLC22A12	Q96S37	553 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	ZNF624	Q9P2J8	865 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-223	ENST00000526553	DNAJB4	Q9UDY4	337 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	ADD3	Q9UEY8	706 aa	Known RBP	4.37	□□□□□ -1.71
CD44-223	ENST00000526553	ACAD8	Q9UKU7	415 aa		4.37	□□□□□ -1.71
CD44-223	ENST00000526553	SMCHD1	A6NHR9	2005 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	hCG_1807616	A0A1W2PRN6	198 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	SYNDIG1L	A6NDD5	238 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	PLK4	O00444	970 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	VILL	O15195	856 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	PCDH7	O60245	1069 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	TUBB	P07437	444 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	KRT20	P35900	424 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	HADHA	P40939	763 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	TUBB4B	P68371	445 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	PLEKHS1	Q5SXH7	462 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	NDUFAF5	Q5TEU4	345 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	PTOV1	Q86YD1	416 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	STPG4	Q8N801	248 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-223	ENST00000526553	ZNF473	Q8WTR7	871 aa	Known RBP	4.36	□□□□□ -1.71
CD44-223	ENST00000526553	CALML4	Q96GE6	196 aa		4.36	□□□□□ -1.71
CD44-223	ENST00000526553	DDO	Q99489	341 aa		4.36	□□□□□ -1.71

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