RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LSM1O15116 133 aaKnown RBP20.93■□□□□ 0.94
VPS28-205ENST00000526204 TRMUO75648 421 aaKnown RBP20.93■□□□□ 0.94
VPS28-205ENST00000526204 PGLSO95336 258 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 SPATA31D3P0C874 917 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 CHRM1P11229 460 aaPredicted RBP20.93■□□□□ 0.94
VPS28-205ENST00000526204 NCK1P16333 377 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 SLC5A2P31639 672 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 NR6A1Q15406 480 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 SLC2A7Q6PXP3 512 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 SPATA31D4Q6ZUB0 917 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 HOMEZQ8IX15 550 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 RBFAQ8N0V3 343 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 OR4F6Q8NGB9 312 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 GRIN3AQ8TCU5 1115 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 RAET1EQ8TD07 263 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 PXYLP1Q8TE99 480 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 WBP2Q969T9 261 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 BIRC7Q96CA5 298 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 EID2BQ96D98 161 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 MYO19Q96H55 970 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 CIPCQ9C0C6 399 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 GLUD1P00367 558 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 TPGS2Q68CL5 300 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 CYP20A1Q6UW02 462 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 ZNF786Q8N393 782 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 HJURPQ8NCD3 748 aaPredicted RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 HHIPL1Q96JK4 782 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 PPP3R2Q96LZ3 170 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 BDH2Q9BUT1 245 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 RPF2Q9H7B2 306 aaKnown RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 IPPKQ9H8X2 491 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 SMPD3Q9NY59 655 aaPredicted RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 VPS51Q9UID3 782 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 OR51B4Q9Y5P0 310 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 A0A0U1RQS6 177 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 PITPNM1O00562 1244 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 ABLIM3O94929 683 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 GNAO1P09471 354 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 G6PDP11413 515 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 JAK1P23458 1154 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 HMOX2P30519 316 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 ESRRGP62508 458 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 VEPH1Q14D04 833 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 AP5B1Q2VPB7 878 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 LYPLAL1Q5VWZ2 237 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 DLEU7Q6UYE1 221 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 MILR1Q7Z6M3 343 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 SERPINA9Q86WD7 417 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 ERI1Q8IV48 349 aaKnown RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 AADATQ8N5Z0 425 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 ADAMTS16Q8TE57 1224 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 PIH1D2Q8WWB5 315 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 CLSTN3Q9BQT9 956 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 FAM126AQ9BYI3 521 aaPredicted RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 ZNF639Q9UID6 485 aa20.92■□□□□ 0.94
VPS28-205ENST00000526204 FCF1Q9Y324 198 aaKnown RBP20.92■□□□□ 0.94
VPS28-205ENST00000526204 BRCA2P51587 3418 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 TRIM64A6NGJ6 449 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 EI24O14681 340 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 GPR39O43194 453 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 TULP3O75386 442 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 PRAMEF1O95521 474 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 PRAMEF12O95522 483 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 CTPS1P17812 591 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 DGKAP23743 735 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 HTR6P50406 440 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 PLD1Q13393 1074 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 SMU1Q2TAY7 513 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 ATXN7L2Q5T6C5 722 aaPredicted RBP20.91■□□□□ 0.94
VPS28-205ENST00000526204 SNX20Q7Z614 316 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 DHRSXQ8N5I4 330 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 DCAF4L2Q8NA75 395 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 LEMD2Q8NC56 503 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 NSMCE2Q96MF7 247 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 OARD1Q9Y530 152 aa20.91■□□□□ 0.94
VPS28-205ENST00000526204 CLOCKO15516 846 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 MBL2P11226 248 aaPredicted RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 ITGALP20701 1170 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 HRH2P25021 359 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 CAPGP40121 348 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 RPS9P46781 194 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 SMAD3P84022 425 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 GLYATQ6IB77 296 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 METTL2BQ6P1Q9 378 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 FAM151BQ6UXP7 276 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 LPCAT2Q7L5N7 544 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 GALNT13Q8IUC8 556 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 FAM126BQ8IXS8 530 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 RNF168Q8IYW5 571 aaPredicted RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 CYGBQ8WWM9 190 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 CGREF1Q99674 301 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 CHID1Q9BWS9 393 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ZFYVE1Q9HBF4 777 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 HMX1Q9NP08 348 aaPredicted RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 DDX18Q9NVP1 670 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 SMPD4Q9NXE4 827 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ATXN10Q9UBB4 475 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 DNMT3BQ9UBC3 853 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 YIPF1Q9Y548 306 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms