RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 OR1D5P58170 312 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 PRAMEP78395 509 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 NFATC2Q13469 925 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 PEX6Q13608 980 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 NR1D2Q14995 579 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 MORF4L2Q15014 288 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 CLPPQ16740 277 aaPredicted RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 LINC00303Q3SY05 128 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 GPR33Q49SQ1 333 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 TSTD2Q5T7W7 516 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 AFTPHQ6ULP2 937 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 MARK2Q7KZI7 788 aaKnown RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 SNX20Q7Z614 316 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 C17orf82Q86X59 251 aaPredicted RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 NRROSQ86YC3 692 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 BBOF1Q8ND07 529 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 RCBTB1Q8NDN9 531 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 PATE1Q8WXA2 126 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS28-204ENST00000526054 SCARF2Q96GP6 870 aaPredicted RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 CDKN2AIPNLQ96HQ2 116 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 CCDC74BQ96LY2 380 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 TTC25Q96NG3 672 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 SERPINB12Q96P63 405 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 OR2M4Q96R27 311 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 FAM117AQ9C073 453 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 CLMPQ9H6B4 373 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 MRM3Q9HC36 420 aaKnown RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 TRIM39Q9HCM9 518 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 SYBUQ9NX95 663 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 SAMD15Q9P1V8 674 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 TMEM98Q9Y2Y6 226 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 OAS3Q9Y6K5 1087 aaKnown RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 IGHV5-10-1A0A0J9YXX1 117 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CTAGE15A4D2H0 777 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 SDR42E2A6NKP2 422 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CYSRT1A8MQ03 144 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.97□□□□□ -0.81
VPS28-204ENST00000526054 CFAP99D6REC4 459 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 STMND1H3BQB6 276 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CCL22O00626 93 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 GAPDHSO14556 408 aaPredicted RBP9.97□□□□□ -0.81
VPS28-204ENST00000526054 RAD51CO43502 376 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 B4GAT1O43505 415 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 NUAK1O60285 661 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A9O60656 530 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 FUCA1P04066 466 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 FAM87AP0C7U9 286 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CTAGE8P0CG41 777 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 RALBP11234 206 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CCL4P13236 92 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A6P19224 532 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 MSH3P20585 1137 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A1P22309 533 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A4P22310 534 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 PSMA3P25788 255 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 AKT1P31749 480 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A3P35503 534 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 ACTR1BP42025 376 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 GPR3P46089 330 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 POLD2P49005 469 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 ATP1A2P50993 1020 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 ACTR1AP61163 376 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 XIAPP98170 497 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CTBSQ01459 385 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CACNG1Q06432 222 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 LRP8Q14114 963 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 DNAJC21Q5F1R6 531 aaKnown RBP9.97□□□□□ -0.81
VPS28-204ENST00000526054 ZRANB3Q5FWF4 1079 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 GPRC6AQ5T6X5 926 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 C8orf74Q6P047 294 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CASC4Q6P4E1 433 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 XKR5Q6UX68 686 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 ADGRG6Q86SQ4 1221 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CTAGE6Q86UF2 777 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CAND1Q86VP6 1230 aaKnown RBP9.97□□□□□ -0.81
VPS28-204ENST00000526054 DTX1Q86Y01 620 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 CTAGE4Q8IX94 777 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 NAGSQ8N159 534 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 EXD3Q8N9H8 876 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 DDHD1Q8NEL9 900 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 OR13J1Q8NGT2 312 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 HEXDCQ8WVB3 486 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 DCUN1D1Q96GG9 259 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 KIFC1Q9BW19 673 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 TRIM31Q9BZY9 425 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 B3GNT4Q9C0J1 378 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 RAB17Q9H0T7 212 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 OR2AG1Q9H205 316 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A7Q9HAW7 530 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A10Q9HAW8 530 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UGT1A8Q9HAW9 530 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 ATXN10Q9UBB4 475 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 SOX13Q9UN79 622 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 UTP11Q9Y3A2 253 aaKnown RBP9.97□□□□□ -0.81
VPS28-204ENST00000526054 NAV2Q8IVL1 2488 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 MYO18BQ8IUG5 2567 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 PIKFYVEQ9Y2I7 2098 aa9.97□□□□□ -0.81
VPS28-204ENST00000526054 MAGEB16A2A368 324 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CCDC162PA2VCL2 907 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms