RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CSKP41240 450 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 UFM1P61960 85 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SPIBQ01892 262 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 OGFOD2Q6N063 350 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 TRNP1Q6NT89 227 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 DNAJB7Q7Z6W7 309 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 RAVER1Q8IY67 606 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SCAIQ8N9R8 606 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ATL1Q8WXF7 558 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NELL1Q92832 810 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 KIFC1Q9BW19 673 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 FAM83DQ9H4H8 585 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 KCTD5Q9NXV2 234 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 PDP1Q9P0J1 537 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 RPS6KA6Q9UK32 745 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 A0A0U1RQS6 177 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SUV39H1O43463 412 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 FADS2O95864 444 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ESR1P03372 595 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ASLP04424 464 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CHRM5P08912 532 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 PTGER3P43115 390 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ILF2Q12905 390 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NADK2Q4G0N4 442 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CPTPQ5TA50 214 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CILP2Q8IUL8 1156 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CFAP206Q8IYR0 622 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ZHX1-C8orf76Q96EF9 292 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 KLHL32Q96NJ5 620 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 FEM1AQ9BSK4 669 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SMOC2Q9H3U7 446 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NSUN3Q9H649 340 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ZBTB26Q9HCK0 441 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 HMG20AQ9NP66 347 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 GABRQQ9UN88 632 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 PCDHB1Q9Y5F3 818 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 C4AP0C0L4 1744 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 C4BP0C0L5 1744 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 H3BM21 787 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 DCLK1O15075 740 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 OR10H3O60404 316 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MED26O95402 600 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 EOMESO95936 686 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ITGB1P05556 798 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SLC35E2BP0CK96 405 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 THRBP10828 461 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 PAX3P23760 479 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MAPK9P45984 424 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ARSDP51689 593 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MRPL28Q13084 256 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 DPYSQ14117 519 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MED22Q15528 200 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 RSBN1Q5VWQ0 802 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SLC2A7Q6PXP3 512 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 IFNL1Q8IU54 200 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 PHF21AQ96BD5 680 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 LRRC58Q96CX6 371 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CERS4Q9HA82 394 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 KLHL28Q9NXS3 571 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MARCH4Q9P2E8 410 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SAP18O00422 153 aaKnown RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 GABRDO14764 452 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 GPR32O75388 356 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 OR6B1O95007 311 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 ACRP10323 421 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 SLC6A2P23975 617 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 ADGRF1Q5T601 910 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 CHST15Q7LFX5 561 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 GATAD2AQ86YP4 633 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 NPAS4Q8IUM7 802 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 VANGL1Q8TAA9 524 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 DPF3Q92784 378 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 AP2M1Q96CW1 435 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 MAGEB10Q96LZ2 347 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 RAD18Q9NS91 495 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 IMP3Q9NV31 184 aaKnown RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 DNAJC11Q9NVH1 559 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TOR4AQ9NXH8 423 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 MAP4K5Q9Y4K4 846 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 NAV1Q8NEY1 1877 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 H3BSA7 217 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 OR1I1O60431 355 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TSPAN9O75954 239 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 CLDN7O95471 211 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 PFKMP08237 780 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 ANXA4P09525 319 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 NR2F1P10589 423 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 HTR7P34969 479 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 CYP20A1Q6UW02 462 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 DEF8Q6ZN54 512 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 PLEKHM3Q6ZWE6 761 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TMEM135Q86UB9 458 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 REPS1Q96D71 796 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 MFSD1Q9H3U5 465 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 EXD2Q9NVH0 621 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 TRNAU1APQ9NX07 287 aaKnown RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 MYH9P35579 1960 aaKnown RBP11.54□□□□□ -0.56
SYNPO-204ENST00000519664 ANKRD66B4E2M5 251 aa11.54□□□□□ -0.56
SYNPO-204ENST00000519664 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms