RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MYO19Q96H55 970 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 COPS8Q99627 209 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 FNIP2Q9P278 1114 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZBTB42B2RXF5 422 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MAFKO60675 156 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PRKD3O94806 890 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CLDN9O95484 217 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 FABP3P05413 133 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TFAP2AP05549 437 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ATXN8OSP0DMR3 200 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 IL7RP16871 459 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 IL12AP29459 219 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ALDH9A1P49189 494 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CARTPTQ16568 116 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 XKR6Q5GH73 641 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TYW3Q6IPR3 259 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 HACD2Q6Y1H2 254 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TPGS1Q6ZTW0 290 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 UBE2R2Q712K3 238 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ZBTB2Q8N680 514 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 FNDC8Q8TC99 324 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MUS81Q96NY9 551 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CYP2S1Q96SQ9 504 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ATP13A3Q9H7F0 1226 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 POLR3BQ9NW08 1133 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 KLHL20Q9Y2M5 609 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 LRRC14BA6NHZ5 514 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CNTN5O94779 1100 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 RASAL1O95294 804 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PRAMEF1O95521 474 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 C1RP00736 705 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PKDCCQ504Y2 493 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PDCD4Q53EL6 469 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 KLHL35Q6PF15 583 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ZC3H7AQ8IWR0 971 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 GLB1L3Q8NCI6 653 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 GPR156Q8NFN8 814 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 BIRC8Q96P09 236 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CAMKK2Q96RR4 588 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 DERL2Q9GZP9 239 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 STARD7Q9NQZ5 370 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PHF24Q9UPV7 400 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 RBMX2Q9Y388 322 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 A0A0J9YVX5 310 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 hCG_2039718K7EN88 272 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 LZTS3O60299 673 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CD1DP15813 335 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ITPKAP23677 461 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MAPK8P45983 427 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 STC1P52823 247 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CDH4P55283 916 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 HMGCS1Q01581 520 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SPIBQ01892 262 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ALDH6A1Q02252 535 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 LAPTM5Q13571 262 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SKIV2LQ15477 1246 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SPATS1Q496A3 300 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 NANOGP8Q6NSW7 305 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ATG14Q6ZNE5 492 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ANKS3Q6ZW76 656 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF467Q7Z7K2 595 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SERPINA9Q86WD7 417 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TTC29Q8NA56 475 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 C19orf18Q8NEA5 215 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 PIK3C3Q8NEB9 887 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 VPS35Q96QK1 796 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 IL12RB2Q99665 862 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 RPF2Q9H7B2 306 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 NANOGQ9H9S0 305 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CRNNQ9UBG3 495 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CDC14AQ9UNH5 594 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 LCHNA4D1U4 455 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 NT5C1B-RDH14C9J2C7 533 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MYL12BO14950 172 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SNAI1O95863 264 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 S1PR4O95977 384 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CATP04040 527 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 G6PDP11413 515 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 BMP2P12643 396 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 VARSP26640 1264 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ELK4P28324 431 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 FMO3P31513 532 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ARSFP54793 590 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 CDKN2DP55273 166 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SMAD3P84022 425 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ATP6AP1Q15904 470 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MEP1AQ16819 746 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 SH2D5Q6ZV89 423 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 AKAP14Q86UN6 197 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 MINDY1Q8N5J2 469 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 ITFG2Q969R8 447 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM245Q9H330 911 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 IGSF5Q9NSI5 407 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 TBCCD1Q9NVR7 557 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 C1orf109Q9NX04 203 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 OGDHLQ9ULD0 1010 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 DNAJC15Q9Y5T4 150 aa8.3□□□□□ -1.08
LIMCH1-216ENST00000512820 GLYATL1P3A0A0U1RQE8 302 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 PRSS51A0A1B0GVH4 220 aa8.29□□□□□ -1.08
LIMCH1-216ENST00000512820 FPGTO14772 594 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms