RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 HTR1EP28566 365 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 KPNA1P52294 538 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CDH4P55283 916 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OXCT1P55809 520 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OR4D2P58180 307 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ERVPABLB-1P60509 514 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPR17Q13304 367 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PYCR3Q53H96 274 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CYBRD1Q53TN4 286 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SLC2A7Q6PXP3 512 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPSM1Q86YR5 675 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CPNE9Q8IYJ1 553 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TBC1D21Q8IYX1 336 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OR52B6Q8NGF0 335 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CYGBQ8WWM9 190 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CDK15Q96Q40 435 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CD320Q9NPF0 282 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SCUBE2Q9NQ36 999 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 COMMD8Q9NX08 183 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 EBF1Q9UH73 591 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TRMT6Q9UJA5 497 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PCDHGC4Q9Y5F7 938 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FADS3Q9Y5Q0 445 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TRANK1O15050 2925 aa15.88■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQS6 177 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CLOCKO15516 846 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TBC1D4O60343 1298 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CASP2P42575 452 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SGSHP51688 502 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DEFB103AP81534 67 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DUSP4Q13115 394 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MFSD4BQ5TF39 518 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DHRS4L2Q6PKH6 230 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TBPL2Q6SJ96 375 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPR141Q7Z602 305 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZFAND4Q86XD8 727 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SFRP1Q8N474 314 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CDYL2Q8N8U2 506 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZNF382Q96SR6 550 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NPLQ9BXD5 320 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SEZ6LQ9BYH1 1024 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 BPIFA1Q9NP55 256 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CD274Q9NZQ7 290 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PRKAG2Q9UGJ0 569 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 VCANP13611 3396 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SYNCRIPO60506 623 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MT-ND1P03886 318 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ENO2P09104 434 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CAPGP40121 348 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 HTR6P50406 440 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 IL2P60568 153 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DCTN2Q13561 401 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LETMD1Q6P1Q0 360 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DLEU7Q6UYE1 221 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 USP51Q70EK9 711 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CLVS1Q8IUQ0 354 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RIMKLAQ8IXN7 391 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OFCC1Q8IZS5 231 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TTC30BQ8N4P2 665 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FNDC5Q8NAU1 212 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 BPIFB1Q8TDL5 484 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NUDT8Q8WV74 236 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ISOC1Q96CN7 298 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CORO1BQ9BR76 489 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ACTL8Q9H568 366 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PIF1Q9H611 641 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SOX17Q9H6I2 414 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TRPV5Q9NQA5 729 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RIC8BQ9NVN3 520 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MARCH5Q9NX47 278 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SMPD3Q9NY59 655 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CXXC1Q9P0U4 656 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 AGO1Q9UL18 857 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SH3GLB1Q9Y371 365 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RAI2Q9Y5P3 530 aa15.87■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PLXNA4Q9HCM2 1894 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SLC38A8A6NNN8 435 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZBBXA8MT70 800 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 H0Y858 1186 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ATF6P18850 670 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RPS9P46781 194 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TTPAP49638 278 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CLCN4P51793 760 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ADARB1P78563 741 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TGFBIQ15582 683 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 C18orf21Q32NC0 220 aaPredicted RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PATL1Q86TB9 770 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPR180Q86V85 440 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 HID1Q8IV36 788 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DHRSXQ8N5I4 330 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DPP10Q8N608 796 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TLR9Q9NR96 1032 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 HEBP1Q9NRV9 189 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TMEM45AQ9NWC5 275 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 VPS9D1Q9Y2B5 631 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TRIOBPQ9H2D6 2365 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 A0A0J9YVX5 310 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 KANSL1LA0AUZ9 987 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 IQCF5A8MTL0 148 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms