RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 BHLHB9Q6PI77 547 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 NCEH1Q6PIU2 408 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 PQLC2Q6ZP29 291 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 IKBIPQ70UQ0 350 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 NRROSQ86YC3 692 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ARHGAP12Q8IWW6 846 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 RBM15BQ8NDT2 890 aaKnown RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 RDM1Q8NG50 284 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 DNAAF4Q8WXU2 420 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 POMGNT1Q8WZA1 660 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SGCDQ92629 289 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 USP6NLQ92738 828 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 FOXN4Q96NZ1 517 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 PSD2Q9BQI7 771 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 MUC13Q9H3R2 512 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 POLR1BQ9H9Y6 1135 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SIX2Q9NPC8 291 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 EIF2B3Q9NR50 452 aaKnown RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 RRP7BPQ9NSQ0 103 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ABI3Q9P2A4 366 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ASIC3Q9UHC3 531 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 CORO1CQ9ULV4 474 aaPredicted RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 LYVE1Q9Y5Y7 322 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 AGRNO00468 2067 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ADAMTS9Q9P2N4 1935 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 LIPT2A6NK58 231 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 H0YIN7 160 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 HS3ST1O14792 307 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 NDUFS3O75489 264 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 ZFAND5O76080 213 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 EML2O95834 649 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 EDN1P05305 212 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 TPOP07202 933 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 RARGP13631 454 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 CDH2P19022 906 aaPredicted RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 NR2F2P24468 414 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 ITGA3P26006 1051 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 PPARGP37231 505 aaPredicted RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 NAP1L1P55209 391 aaKnown RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 CLDN20P56880 219 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 PRAMEP78395 509 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 NAB2Q15742 525 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 CACNA2D4Q7Z3S7 1137 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 LONP2Q86WA8 852 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 LMNTD2Q8IXW0 634 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 OR14L1PQ8NHC6 308 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 SLC44A1Q8WWI5 657 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 TIGD1Q96MW7 591 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 NCAPGQ9BPX3 1015 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 PCGF1Q9BSM1 259 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 ITPAQ9BY32 194 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 SH2D4AQ9H788 454 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 SLC28A3Q9HAS3 691 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 RANGRFQ9HD47 186 aaPredicted RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 ACSS1Q9NUB1 689 aaPredicted RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 SEPT11Q9NVA2 429 aaKnown RBP3.41□□□□□ -1.86
VPS50-219ENST00000495039 MTMR6Q9Y217 621 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 MAU2Q9Y6X3 613 aa3.41□□□□□ -1.86
VPS50-219ENST00000495039 IGLV7-46A0A075B6I9 117 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 A0A1W2PQF6 199 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 MYO1GB0I1T2 1018 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 VCYO14598 125 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 RTL8CO15255 209 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 JRKO75564 520 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 MAPK4P31152 587 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 EIF5P55010 431 aaKnown RBP3.4□□□□□ -1.87
VPS50-219ENST00000495039 SNRPD1P62314 119 aaKnown RBP3.4□□□□□ -1.87
VPS50-219ENST00000495039 CRYMQ14894 314 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 ZSCAN23Q3MJ62 389 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 ASPRV1Q53RT3 343 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 HYIQ5T013 277 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 PWWP2BQ6NUJ5 590 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 KLHL35Q6PF15 583 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 DOK6Q6PKX4 331 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 SARM1Q6SZW1 724 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 SCML4Q8N228 414 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 LINC00612Q8N6U2 182 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 SCFD2Q8WU76 684 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 ZKSCAN4Q969J2 545 aaPredicted RBP3.4□□□□□ -1.87
VPS50-219ENST00000495039 IGSF8Q969P0 613 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 RRNAD1Q96FB5 475 aaKnown RBP3.4□□□□□ -1.87
VPS50-219ENST00000495039 CMTM3Q96MX0 182 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 ACOX2Q99424 681 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 PKP2Q99959 881 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 CHCHD6Q9BRQ6 235 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 FGFBP2Q9BYJ0 223 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 FTOQ9C0B1 505 aaKnown RBP eCLIP3.4□□□□□ -1.87
VPS50-219ENST00000495039 KAT14Q9H8E8 782 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 PLCXD1Q9NUJ7 323 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 BLOC1S4Q9NUP1 217 aa3.4□□□□□ -1.87
VPS50-219ENST00000495039 SMCHD1A6NHR9 2005 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 A0A0G2JNG1 304 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 C1orf226A1L170 272 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 C5orf60A6NFR6 353 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 MAGEB17A8MXT2 336 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 ANKRD66B4E2M5 251 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 AP3D1O14617 1153 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 SCAMP1O15126 338 aa3.39□□□□□ -1.87
VPS50-219ENST00000495039 BUD23O43709 281 aaKnown RBP3.39□□□□□ -1.87
VPS50-219ENST00000495039 HMBSP08397 361 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms