RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MCM10Q7L590 875 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 SHFQ7M4L6 423 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CCDC83Q8IWF9 413 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 BOLLQ8N9W6 283 aaKnown RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 NCOA7Q8NI08 942 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 HMGCLL1Q8TB92 370 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 PRCCQ92733 491 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 FAM81BQ96LP2 452 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 SH3GL2Q99962 352 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 WDR77Q9BQA1 342 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 KXD1Q9BQD3 176 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 C16orf70Q9BSU1 422 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 MOV10L1Q9BXT6 1211 aaKnown RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 KLK15Q9H2R5 256 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 TASP1Q9H6P5 420 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 WDR26Q9H7D7 661 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 RHCGQ9UBD6 479 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 FBXL5Q9UKA1 691 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CDC14AQ9UNH5 594 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 RPH3AQ9Y2J0 694 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 A0A1W2PPC1 479 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 NDC80O14777 642 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 TO15178 435 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 FOXD2O60548 495 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 MED24O75448 989 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 SLC16A8O95907 504 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 GH1P01241 217 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 PLA2G4BP0C869 781 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CHRNB2P17787 502 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 WT1P19544 449 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 MAKP20794 623 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 APOBEC1P41238 236 aaKnown RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CD81P60033 236 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 KLHL30Q0D2K2 578 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CDSNQ15517 529 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 SGCBQ16585 318 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 SYT16Q17RD7 645 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 FUT11Q495W5 492 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 IQCCQ4KMZ1 466 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 ENPP7Q6UWV6 458 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 C4orf19Q8IY42 314 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 BBS10Q8TAM1 723 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 RND1Q92730 232 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF503Q96F45 646 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 C5orf30Q96GV9 206 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 GDAP1L1Q96MZ0 367 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 AKIRIN1Q9H9L7 192 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CNGB3Q9NQW8 809 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 OR6C3Q9NZP0 311 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 KLHL13Q9P2N7 655 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 TBK1Q9UHD2 729 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 PIN4Q9Y237 131 aaKnown RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 GRID2IPA4D2P6 1211 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 DBX1A6NMT0 343 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 PTGESO14684 152 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 HS3ST1O14792 307 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TTI1O43156 1089 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 SPINT2O43291 252 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ZIC3O60481 467 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 HOXD9P28356 352 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 CCND3P30281 292 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 IL15P40933 162 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ASCL1P50553 236 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 NR1D2Q14995 579 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 CDO1Q16878 200 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 IFI44LQ53G44 452 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 HECTD2Q5U5R9 776 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 DCAF12L2Q5VW00 463 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 LCN10Q6JVE6 187 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TOM1L2Q6ZVM7 507 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF534Q76KX8 674 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 PATL1Q86TB9 770 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 FOXP4Q8IVH2 680 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 HDDC3Q8N4P3 179 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF611Q8N823 705 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 C8orf58Q8NAV2 365 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 DENND1AQ8TEH3 1009 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 SLC13A3Q8WWT9 602 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TRIB2Q92519 343 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 RAD54LQ92698 747 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ZFYVE19Q96K21 471 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 WDR83Q9BRX9 315 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 LMAN1LQ9HAT1 526 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 COMMD8Q9NX08 183 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TMEM161AQ9NX61 479 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 P4HTMQ9NXG6 502 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 MCM9Q9NXL9 1143 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ASTN2O75129 1339 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 A0A0G2JLL6 359 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 RGSL1A5PLK6 1076 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 MPHOSPH10O00566 681 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 PAX4O43316 350 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 DDHD2O94830 711 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 PGLSO95336 258 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 OR2T7P0C7T2 308 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 GHRP10912 638 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 HNRNPH1P31943 449 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 RAD23BP54727 409 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TPD52P55327 224 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 CFHR1Q03591 330 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms