RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 BCL7AQ4VC05 210 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 PRRT3Q5FWE3 981 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 ACVR1CQ8NER5 493 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 CCL4L1Q8NHW4 92 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 LMX1AQ8TE12 382 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 EPS8L3Q8TE67 593 aaKnown RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 HNRNPLLQ8WVV9 542 aaKnown RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 SLC44A1Q8WWI5 657 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 SCG3Q8WXD2 468 aaKnown RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 ELMO1Q92556 727 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 SCARF2Q96GP6 870 aaPredicted RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 VPS39Q96JC1 886 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 CCM2Q9BSQ5 444 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 AARSD1Q9BTE6 412 aaKnown RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 OSGEPL1Q9H4B0 414 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 RHOJQ9H4E5 214 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 GAREM1Q9H706 876 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 IL21RQ9HBE5 538 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 KLC4Q9NSK0 619 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 SLC23A2Q9UGH3 650 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 TSR3Q9UJK0 312 aaKnown RBP16.91■□□□□ 0.3
LIME1-208ENST00000493265 SLC39A10Q9ULF5 831 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 GPR34Q9UPC5 381 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 DGKBQ9Y6T7 804 aa16.91■□□□□ 0.3
LIME1-208ENST00000493265 FAM95CA0A1B0GW59 222 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 F8W8V4 182 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 H3BM21 787 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 CELA2BP08218 269 aaPredicted RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 NME1P15531 152 aaKnown RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 H2AFXP16104 143 aaPredicted RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 ENGP17813 658 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 AK4P27144 223 aaPredicted RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 ATXN3P54252 364 aaPredicted RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 CTBSQ01459 385 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 BOP1Q14137 746 aaKnown RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 SYTL3Q4VX76 610 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 MROH9Q5TGP6 573 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 HECTD2Q5U5R9 776 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 GALNT7Q86SF2 657 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 AMZ2Q86W34 360 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 DCAKDQ8WVC6 231 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 ELF4Q99607 663 aaPredicted RBP16.9■□□□□ 0.3
LIME1-208ENST00000493265 TSSK1BQ9BXA7 367 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 CAB39LQ9H9S4 337 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 GALPQ9UBC7 116 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 TBK1Q9UHD2 729 aa16.9■□□□□ 0.3
LIME1-208ENST00000493265 TMEM131Q92545 1883 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 C1QTNF9BB2RNN3 333 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 H3BMM5 538 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 QSOX1O00391 747 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 SNX2O60749 519 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 VPS26AO75436 327 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 PROS1P07225 676 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 ITGA2BP08514 1039 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 C1QTNF9P0C862 333 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 SPINK2P20155 84 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 GCAP28676 217 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 ARRB1P49407 418 aaPredicted RBP16.89■□□□□ 0.29
LIME1-208ENST00000493265 LIMK2P53671 638 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 ADARP55265 1226 aaKnown RBP16.89■□□□□ 0.29
LIME1-208ENST00000493265 CDKN2DP55273 166 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 HNRNPKP61978 463 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIME1-208ENST00000493265 ILF3Q12906 894 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIME1-208ENST00000493265 BNIP3Q12983 259 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 NFE2L1Q14494 772 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 SEPT7Q16181 437 aaKnown RBP16.89■□□□□ 0.29
LIME1-208ENST00000493265 SLC30A9Q6PML9 568 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 IL27RAQ6UWB1 636 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 TAF8Q7Z7C8 310 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 C11orf96Q7Z7L8 435 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 PIM3Q86V86 326 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 CFAP206Q8IYR0 622 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 LILRA3Q8N6C8 439 aaPredicted RBP16.89■□□□□ 0.29
LIME1-208ENST00000493265 SIDT2Q8NBJ9 832 aaKnown RBP16.89■□□□□ 0.29
LIME1-208ENST00000493265 PANX3Q96QZ0 392 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 GPR21Q99679 349 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 LRRC61Q9BV99 259 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 ERVMER34-1Q9H9K5 563 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 TMEM9BQ9NQ34 198 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 CTNNAL1Q9UBT7 734 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 LRP4O75096 1905 aa16.89■□□□□ 0.29
LIME1-208ENST00000493265 CER1O95813 267 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 NUDT17P0C025 328 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 VCLP18206 1134 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 CCR7P32248 378 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 ACTR1BP42025 376 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 PREPP48147 710 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 SLC12A2P55011 1212 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 ACTR1AP61163 376 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 USP10Q14694 798 aaKnown RBP16.88■□□□□ 0.29
LIME1-208ENST00000493265 TMED2Q15363 201 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 ZNF423Q2M1K9 1284 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 UAP1L1Q3KQV9 507 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 FAM45BPQ6NSW5 357 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 UNQ6494/PRO21346Q6UXR6 183 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 FAM83HQ6ZRV2 1179 aaPredicted RBP16.88■□□□□ 0.29
LIME1-208ENST00000493265 TAOK1Q7L7X3 1001 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 OXR1Q8N573 874 aa16.88■□□□□ 0.29
LIME1-208ENST00000493265 ZNF548Q8NEK5 533 aaPredicted RBP16.88■□□□□ 0.29
LIME1-208ENST00000493265 FAM45AQ8TCE6 357 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms