RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TMEM220Q6QAJ8 160 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 BZW1Q7L1Q6 419 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 KMT5CQ86Y97 462 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 APLFQ8IW19 511 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ZNF567Q8N184 647 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 FAM26EQ8N5C1 309 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ZNF514Q96K75 400 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 FCRL4Q96PJ5 515 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 FCRL5Q96RD9 977 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 TRIM55Q9BYV6 548 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 NHEJ1Q9H9Q4 299 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 FGF21Q9NSA1 209 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 IMP3Q9NV31 184 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ZNHIT6Q9NWK9 470 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 SMOXQ9NWM0 555 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 HACD3Q9P035 362 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 DNMT3AQ9Y6K1 912 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 OR5K3A6NET4 321 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 TLCD2A6NGC4 264 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 SPOPO43791 374 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 TPM3P06753 285 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 GP1BBP13224 206 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 HLA-DPA1P20036 260 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 PTPN4P29074 926 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 TNNT3P45378 269 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-204ENST00000489403 LAMB3Q13751 1172 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 TFDP2Q14188 446 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 PTPRCAPQ14761 206 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 DNTTIP2Q5QJE6 756 aaKnown RBP12.11□□□□□ -0.47
CPSF3-204ENST00000489403 METRNLQ641Q3 311 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 KLHL35Q6PF15 583 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 SPOCD1Q6ZMY3 1216 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 DET1Q7L5Y6 550 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 PID1Q7Z2X4 250 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 ZC3H18Q86VM9 953 aaKnown RBP12.11□□□□□ -0.47
CPSF3-204ENST00000489403 D2HGDHQ8N465 521 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 BEND7Q8N7W2 519 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-204ENST00000489403 IPMKQ8NFU5 416 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 NAT14Q8WUY8 206 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 HAUS1Q96CS2 278 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 CCDC42Q96M95 316 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 C12orf66Q96MD2 445 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 CD180Q99467 661 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 WWP1Q9H0M0 922 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 PKP3Q9Y446 797 aa12.11□□□□□ -0.47
CPSF3-204ENST00000489403 NAV2Q8IVL1 2488 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 hCG_1818297A0A087WSY0 165 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 UBA6A0AVT1 1052 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 PSTPIP1O43586 416 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 MFAP3LO75121 409 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 CPNE3O75131 537 aaKnown RBP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 AKT1P31749 480 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 ARL4DP49703 201 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 HSD11B2P80365 405 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 CHAF1BQ13112 559 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 MPP3Q13368 585 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 XRCC4Q13426 336 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 IL10RAQ13651 578 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 TCEAL1Q15170 157 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 GPR19Q15760 415 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 UGT8Q16880 541 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 TFDP3Q5H9I0 405 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 FNBP1LQ5T0N5 605 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 CPZQ66K79 652 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 SYVN1Q86TM6 617 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 BPHLQ86WA6 291 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 ATCAYQ86WG3 371 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 OOSP2Q86WS3 158 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 THAP4Q8WY91 577 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 SEC14L1Q92503 715 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 P3H4Q92791 437 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 ZNF501Q96CX3 271 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 QKIQ96PU8 341 aaKnown RBP eCLIP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 INSM2Q96T92 566 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-204ENST00000489403 VAT1Q99536 393 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 GORASP1Q9BQQ3 440 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 GPR87Q9BY21 358 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 HRASLS2Q9NWW9 162 aa12.1□□□□□ -0.47
CPSF3-204ENST00000489403 BLACEA4D250 179 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 OR6C74A6NCV1 312 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 MGAT4DA6NG13 374 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 CBFA2T2O43439 604 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 SCRG1O75711 98 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 PRAMEF1O95521 474 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 ZBTB11O95625 1053 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 MSH3P20585 1137 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 UQCRFS1P47985 274 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 KPNA2P52292 529 aaKnown RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 RPS15P62841 145 aaKnown RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 TUBB4BP68371 445 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 GPS2Q13227 327 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 TUBB2AQ13885 445 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 LONRF2Q1L5Z9 754 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 FBXO38Q6PIJ6 1188 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 ZNF517Q6ZMY9 492 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 TMEM126BQ8IUX1 230 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 SPDYE1Q8NFV5 336 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-204ENST00000489403 OR2L2Q8NH16 312 aa12.09□□□□□ -0.47
CPSF3-204ENST00000489403 ZNF398Q8TD17 642 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms