RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SOD1P00441 154 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 PRLP01236 227 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 JCHAINP01591 159 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 RPLP0P05388 317 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 MMP2P08253 660 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 TNNT1P13805 278 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 COMTP21964 271 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 RBMS1P29558 406 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CD86P42081 329 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 NOP2P46087 812 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 GNPDA1P46926 289 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 STC1P52823 247 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 HADHBP55084 474 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CCL7P80098 99 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC173Q0VFZ6 552 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 ZBTB17Q13105 803 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 HLTFQ14527 1009 aaKnown RBP eCLIP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 IHHQ14623 411 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 C14orf28Q4W4Y0 310 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CERCAMQ5T4B2 595 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 DOK6Q6PKX4 331 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 BZW1Q7L1Q6 419 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 TC2NQ8N9U0 490 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF248Q8NDW4 579 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CCL4L1Q8NHW4 92 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 WDR36Q8NI36 951 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CCHCR1Q8TD31 782 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 HIC2Q96JB3 615 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 LYSMD1Q96S90 227 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 FOXP3Q9BZS1 431 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 STRADBQ9C0K7 418 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 BRD8Q9H0E9 1235 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 CDH19Q9H159 772 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 ABCG8Q9H221 673 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 LRRN3Q9H3W5 708 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 SUDS3Q9H7L9 328 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 TRNAU1APQ9NX07 287 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 APPL1Q9UKG1 709 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 SUFUQ9UMX1 484 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 PCDHGA8Q9Y5G5 932 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 ZFYVE26Q68DK2 2539 aa6.75□□□□□ -1.33
CCDC88A-213ENST00000476903 ITPR1Q14643 2758 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC187A0A096LP49 1063 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 RGSL1A5PLK6 1076 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 RHPN2P1A8MT19 583 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ANKRD66B4E2M5 251 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 D6RAR5 112 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ZW10O43264 779 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 LCA5LO95447 670 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CLDN7O95471 211 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ITPKBP27987 946 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CYLC1P35663 651 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ADCY8P40145 1251 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CDKN2BP42772 138 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 MAGEA1P43355 309 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 NR2C2P49116 596 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 PDX1P52945 283 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 INHBCP55103 352 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 DYNLT1P63172 113 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 EIF3IQ13347 325 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 BIRC2Q13490 618 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 TFDP2Q14188 446 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SPA17Q15506 151 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC14A2Q15849 920 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 TFDP3Q5H9I0 405 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 BROXQ5VW32 411 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC30A9Q6PML9 568 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 NPNTQ6UXI9 565 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 RFLNAQ6ZTI6 216 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SPRED1Q7Z699 444 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 NT5DC3Q86UY8 548 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 NRROSQ86YC3 692 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC170Q8IYT3 715 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ARL14Q8N4G2 192 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CNTD1Q8N815 330 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 Q8N9G6 341 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 EXD1Q8NHP7 514 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SCAMP4Q969E2 229 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 IMP4Q96G21 291 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 TMEM74Q96NL1 305 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC46A1Q96NT5 459 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 AGAP3Q96P47 875 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 OLFM3Q96PB7 478 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SMIM14Q96QK8 99 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 OR2M4Q96R27 311 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 MLPHQ9BV36 600 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 RIOK2Q9BVS4 552 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 EPB41L5Q9HCM4 733 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 ASCL3Q9NQ33 180 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SPATS2LQ9NUQ6 558 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 PKD2L2Q9NZM6 624 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SEPT10Q9P0V9 454 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 TAAR2Q9P1P5 351 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 VPS18Q9P253 973 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 LRIT1Q9P2V4 623 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 CNOT11Q9UKZ1 510 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 HYOU1Q9Y4L1 999 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 PCDHA13Q9Y5I0 950 aa6.74□□□□□ -1.33
CCDC88A-213ENST00000476903 RNF215Q9Y6U7 377 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms