RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 BLOC1S5Q8TDH9 187 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 UBXN4Q92575 508 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TTC25Q96NG3 672 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 INSM2Q96T92 566 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZCCHC2Q9C0B9 1178 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GBA3Q9H227 469 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AKIRIN1Q9H9L7 192 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LHX9Q9NQ69 397 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PADI1Q9ULC6 663 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TFR2Q9UP52 801 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PKP3Q9Y446 797 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KCTD3Q9Y597 815 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PRRC2CQ9Y520 2896 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KLHL33A6NCF5 533 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OR5K3A6NET4 321 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MGAT4DA6NG13 374 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OR2AG2A6NM03 316 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 K7EM74 188 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CREG1O75629 220 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RASSF9O75901 435 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MTHFD1P11586 935 aaKnown RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LPOP22079 712 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RBL1P28749 1068 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PTPN7P35236 360 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HALP42357 657 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 COPS2P61201 443 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FOXK1P85037 733 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SRSF1Q07955 248 aaKnown RBP eCLIP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TAF1AQ15573 450 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 BCL7AQ4VC05 210 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 COLEC12Q5KU26 742 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CAPRIN2Q6IMN6 1127 aaKnown RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 DENND5AQ6IQ26 1287 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PWWP2BQ6NUJ5 590 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TCTN3Q6NUS6 607 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 IRGCQ6NXR0 463 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SARM1Q6SZW1 724 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CERS6Q6ZMG9 384 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PPP1R3BQ86XI6 285 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KMT5CQ86Y97 462 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RASGRP3Q8IV61 690 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CCDC170Q8IYT3 715 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 BEND7Q8N7W2 519 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OR2L2Q8NH16 312 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HAUS1Q96CS2 278 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RBM41Q96IZ5 413 aaKnown RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CD180Q99467 661 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MAP3K3Q99759 626 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TSPY26PQ9H489 355 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C10orf88Q9H8K7 445 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ARNT2Q9HBZ2 717 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZNF71Q9NQZ8 489 aaPredicted RBP11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KCND3Q9UK17 655 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ACSL5Q9ULC5 683 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PSMD13Q9UNM6 376 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PCDHA3Q9Y5H8 950 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PCDHA13Q9Y5I0 950 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ARL5AQ9Y689 179 aa11.97□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 NBPF19A0A087WUL8 3843 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RCCD1A6NED2 376 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C5orf60A6NFR6 353 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TLCD2A6NGC4 264 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C21orf140B9A014 251 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 F5H423 210 aaPredicted RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 STX7O15400 261 aaKnown RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SRP72O76094 671 aaKnown RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MT-ND3P03897 115 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CTNNA1P35221 906 aaKnown RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GEMP55040 296 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OLIG2Q13516 323 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KCNAB1Q14722 419 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LONRF2Q1L5Z9 754 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FNBP1LQ5T0N5 605 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C16orf46Q6P387 395 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KLHL35Q6PF15 583 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TMEM135Q86UB9 458 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 APLFQ8IW19 511 aaPredicted RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CARFQ8N187 725 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SPDYE1Q8NFV5 336 aaPredicted RBP11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OR4K2Q8NGD2 314 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ACTL9Q8TC94 416 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CT55Q8WUE5 264 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RNF31Q96EP0 1072 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 STAMBPL1Q96FJ0 436 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 HEMGNQ9BXL5 484 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KIR3DX1Q9H7L2 352 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PDE7BQ9NP56 450 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RSPH14Q9UHP6 348 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SLC24A2Q9UI40 661 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 POLHQ9Y253 713 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PCDHB3Q9Y5E6 796 aa11.96□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FER1L5A0AVI2 2057 aa11.96□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TNRC6AQ8NDV7 1962 aaKnown RBP11.96□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANKRD12Q6UB98 2062 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCDC88CQ9P219 2028 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 IGLV3-16A0A075B6K0 115 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANXA9O76027 345 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PRAMEF1O95521 474 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCNYL3P0C7X3 344 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 EBLN1P0CF75 366 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms